genome.fa.s3158.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003158.1 Hibiscus syriacus cultivar Beakdansim tig00006645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82956

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2269--2302	9	3.7	9	88	4	50	52	17	5	23	1.66
2317--2683	176	2.1	179	89	5	559	46	8	3	41	1.52
2799--2827	15	1.9	15	100	0	58	17	6	27	48	1.72
4105--4179	15	5.1	15	77	9	91	41	6	18	33	1.77
4103--4179	30	2.6	29	89	4	127	40	6	18	35	1.76
4188--4221	14	2.4	14	90	0	50	35	14	17	32	1.91
4528--4575	23	2.1	23	88	0	69	12	14	47	25	1.79
4580--4646	19	3.5	19	75	6	64	44	0	0	55	0.99
5012--5056	20	2.2	20	80	0	54	44	2	0	53	1.13
5022--5129	32	3.6	29	73	21	82	50	1	0	47	1.18
5464--5546	42	2.0	42	90	0	130	51	18	12	18	1.75
10680--10796	61	1.9	59	80	10	130	31	26	11	30	1.91
10720--10928	20	10.4	20	72	11	124	30	24	11	34	1.90
10673--10837	81	2.0	81	83	6	210	30	26	11	31	1.91
11715--11748	12	2.8	12	90	0	50	55	29	0	14	1.40
14500--14559	20	3.0	20	78	9	77	30	21	21	26	1.99
14608--14652	20	2.2	20	88	0	63	44	20	20	15	1.87
14615--14675	20	3.0	20	82	0	68	45	24	13	16	1.83
14733--14770	20	1.9	20	88	0	58	18	13	21	47	1.82
16244--16359	21	5.5	21	85	0	160	24	18	37	20	1.94
16244--16360	42	2.8	42	90	0	180	24	17	36	20	1.94
16768--16817	21	2.4	21	93	0	82	34	32	14	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18306--18357	20	2.6	20	81	0	68	48	23	17	11	1.79
18723--18772	22	2.3	22	78	0	55	22	20	38	20	1.94
19585--19618	14	2.4	15	90	9	54	52	2	0	44	1.16
19561--19612	25	2.1	25	82	7	61	57	1	1	38	1.21
21742--22008	91	2.9	91	91	3	405	24	20	15	39	1.91
22037--22379	136	2.6	133	82	5	388	26	20	16	36	1.94
23254--23296	9	5.2	8	86	13	61	13	13	0	72	1.13
23254--23296	17	2.6	17	89	10	63	13	13	0	72	1.13
33949--34005	22	2.7	21	78	8	62	66	8	7	17	1.41
34694--34727	14	2.4	15	90	9	54	52	0	0	47	1.00
36689--36750	24	2.5	24	84	7	81	58	8	0	33	1.28
36716--36758	18	2.4	19	84	11	63	60	2	0	37	1.10
37581--37700	60	2.0	60	88	3	179	45	5	11	37	1.65
39972--40067	43	2.3	43	92	1	158	46	18	11	22	1.81
45874--45936	21	3.3	21	63	28	59	39	23	4	31	1.76
45835--45940	35	3.0	35	88	4	151	45	20	5	28	1.74
46505--49071	225	11.4	225	95	0	4535	29	18	14	37	1.90
46505--49071	901	2.8	900	95	0	4580	29	18	14	37	1.90
49473--49527	22	2.5	22	87	0	83	36	14	14	34	1.87
54367--54399	10	3.4	10	83	8	50	0	18	0	81	0.68
54705--54739	2	17.5	2	100	0	70	51	0	0	48	1.00
57723--57761	15	2.7	15	88	4	53	51	12	15	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57723--57770	14	3.4	14	85	2	51	50	12	14	22	1.77
58018--58103	43	2.0	43	90	0	136	34	24	10	30	1.89
59471--59522	15	3.5	15	74	12	54	73	0	3	23	1.00
61604--61686	3	28.0	3	85	2	114	60	0	0	39	0.97
62176--62282	24	4.5	24	87	0	142	32	14	30	22	1.93
64636--64667	2	16.0	2	100	0	64	50	0	0	50	1.00
65060--65123	2	32.0	2	100	0	128	50	0	0	50	1.00
65586--65881	20	14.6	20	71	10	129	40	23	17	18	1.91
65684--65878	81	2.4	81	86	2	266	40	23	17	18	1.91
65667--65878	41	5.2	41	85	2	266	39	24	17	18	1.92
66438--66509	20	3.6	19	83	5	81	51	20	15	12	1.75
66453--66516	21	3.1	21	84	6	87	51	17	20	10	1.75
66493--66573	33	2.5	33	91	0	126	48	22	19	9	1.78
66591--66660	14	4.6	14	80	16	86	8	25	22	42	1.82
66605--66709	33	3.0	33	83	10	129	11	24	20	42	1.85
66645--66700	20	2.8	20	84	10	87	14	25	21	39	1.91
68459--68487	12	2.3	13	94	5	51	3	6	17	72	1.21
68399--68872	94	5.1	94	96	0	835	20	12	19	47	1.81
69435--69485	14	3.1	17	72	21	54	45	17	23	13	1.84
69435--69528	33	2.8	33	90	3	136	45	21	20	12	1.84
69435--69493	19	3.4	19	73	22	74	45	18	22	13	1.84
69467--69543	19	4.3	19	76	18	76	45	23	16	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69578--69709	20	7.4	19	72	19	104	17	21	17	43	1.87
69543--69723	33	5.3	33	81	9	218	14	22	18	44	1.86
72257--72310	24	2.3	23	87	6	81	38	20	16	24	1.92
73162--73401	20	11.9	19	69	15	103	21	17	22	38	1.93
73170--73419	40	6.2	40	79	7	220	20	17	22	39	1.92
73170--73327	60	2.6	58	81	11	192	20	17	21	40	1.91
73385--73480	42	2.3	42	76	5	97	22	19	22	34	1.97
73469--73522	20	2.7	19	75	8	63	16	18	31	33	1.93
76091--76214	52	2.4	52	80	1	151	26	4	12	57	1.52
78823--78862	19	2.1	19	95	0	71	35	22	22	20	1.96

Tables:   1

The End!