genome.fa.s3159.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003159.1 Hibiscus syriacus cultivar Beakdansim tig00006650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158569

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916--968	24	2.2	25	83	10	65	52	11	3	32	1.55
9862--9954	26	3.4	26	78	11	105	30	2	6	61	1.33
10389--10448	17	3.2	17	73	24	57	28	0	1	70	0.97
13367--13393	13	2.1	13	100	0	54	37	7	25	29	1.83
14086--14177	2	46.5	2	95	2	168	48	0	1	50	1.08
14269--14326	13	4.9	12	76	14	50	50	5	5	39	1.47
14269--14327	24	2.5	25	78	10	70	50	5	5	38	1.46
14315--14347	17	1.9	17	100	0	66	48	0	9	42	1.35
14366--14410	12	3.6	12	82	11	54	44	4	13	37	1.64
14365--14410	14	3.4	14	82	8	51	43	4	13	39	1.63
14869--14923	2	27.5	2	100	0	110	50	0	0	49	1.00
19381--19414	16	2.1	16	88	0	50	58	0	0	41	0.98
20575--20617	18	2.2	20	84	8	63	44	2	16	37	1.60
24795--24835	15	2.7	15	92	3	64	31	29	21	17	1.96
25089--25113	12	2.1	12	100	0	50	28	32	16	24	1.96
38868--39056	36	5.3	36	89	1	236	20	25	21	32	1.97
38868--39047	71	2.5	72	86	1	245	20	25	22	32	1.98
40057--40101	23	2.0	23	86	0	63	26	26	26	20	1.99
40069--40383	149	2.1	149	95	1	560	34	20	17	26	1.95
47094--47138	23	2.0	23	86	0	63	26	26	26	20	1.99
47106--47420	149	2.1	149	95	1	560	33	20	18	27	1.96
47875--48031	64	2.4	63	80	10	158	28	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51991--52015	13	1.9	13	100	0	50	56	12	24	8	1.62
60279--60320	12	3.6	11	90	3	57	78	7	14	0	0.95
60280--60318	11	3.5	11	96	3	69	76	7	15	0	0.99
60257--60333	23	3.4	22	77	13	75	75	7	15	1	1.09
62757--62931	66	2.7	66	81	0	199	26	20	12	40	1.88
62897--62984	36	2.4	37	84	3	117	25	19	13	42	1.88
62832--63049	101	2.2	101	85	4	289	27	19	13	39	1.89
63047--63339	140	2.1	140	86	2	403	30	28	16	24	1.96
63580--63610	3	10.3	3	100	0	62	32	0	0	67	0.91
64252--64296	19	2.5	17	82	7	54	84	8	4	2	0.84
69063--69117	23	2.5	21	81	16	67	25	25	25	23	2.00
69057--69137	20	3.8	20	75	12	63	20	22	30	25	1.98
69201--69292	46	2.0	46	93	0	157	39	14	10	35	1.81
72026--72055	16	1.9	15	93	6	51	40	13	0	46	1.43
72738--72876	70	2.0	70	98	0	269	22	28	12	37	1.90
73151--73222	33	2.1	34	82	7	85	27	15	6	50	1.69
76290--76386	3	31.7	3	84	8	124	36	2	0	61	1.07
78414--78460	17	2.8	17	75	12	51	25	0	0	74	0.82
82728--82862	72	1.9	72	93	0	234	25	20	20	34	1.97
84609--85400	83	9.6	83	97	0	1421	27	13	22	37	1.91
88020--88098	22	3.6	22	87	3	106	32	15	13	37	1.87
88568--92376	113	33.7	113	99	0	7460	37	12	20	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92283--92449	73	2.3	73	91	3	266	34	13	18	34	1.89
92742--92841	3	32.7	3	81	7	112	38	2	0	60	1.09
97565--97612	15	3.1	15	80	11	53	27	0	6	66	1.15
102639--102696	18	3.2	18	85	9	91	27	5	13	53	1.61
102630--102699	36	1.9	36	97	0	131	28	4	14	52	1.60
104622--104664	20	2.1	21	83	12	54	72	0	6	20	1.08
108146--108201	27	2.1	26	83	3	67	51	0	3	44	1.18
111493--111560	31	2.2	31	84	5	84	52	8	8	29	1.62
114320--114361	22	2.0	20	90	9	66	4	14	33	47	1.65
118548--118668	31	3.9	30	76	9	109	29	19	20	30	1.97
123851--124368	55	9.4	54	83	7	480	31	23	15	28	1.96
123843--124368	110	4.8	110	86	2	632	31	23	15	28	1.96
123843--124368	165	3.2	165	86	3	670	31	23	15	28	1.96
124394--124536	37	3.9	37	88	1	162	20	19	18	40	1.92
125833--125913	7	10.7	7	76	15	72	12	14	0	72	1.11
125824--125914	31	3.0	31	82	9	107	12	15	0	72	1.12
125817--125913	23	4.2	24	78	14	80	12	14	0	73	1.11
129408--131196	6	302.7	6	93	5	3134	49	16	0	33	1.46
141628--141698	23	3.2	23	86	5	85	22	23	32	21	1.98
141630--141709	21	3.7	21	80	6	79	21	27	28	22	1.99
151368--151416	22	2.2	22	85	0	62	22	18	12	46	1.82
158128--158157	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!