Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000316.1 Hibiscus syriacus cultivar Beakdansim tig00000595_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144220

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1851--2106
124
2.0
126
94
4
453
32
16
12
39
1.85
6575--6617
21
2.0
21
86
8
61
34
2
0
62
1.08
7099--7171
35
2.1
35
89
0
110
41
28
6
23
1.80
7260--7287
12
2.3
12
100
0
56
39
17
7
35
1.78
14273--14322
26
1.9
26
95
0
91
34
6
30
30
1.81
15676--15745
26
2.7
26
81
0
95
42
11
17
28
1.83
17622--17738
45
2.6
45
90
0
180
20
20
17
41
1.90
17631--17778
15
10.3
15
66
13
87
19
18
17
44
1.87
17678--17807
69
1.9
69
85
0
179
19
18
16
45
1.86
19000--19066
24
2.8
24
86
0
98
25
11
29
32
1.92
19024--19341
88
3.5
88
88
6
440
28
13
30
28
1.94
19158--19341
98
1.9
98
93
2
316
28
14
29
27
1.95
25602--25626
3
8.3
3
100
0
50
36
0
0
64
0.94
26231--26261
5
6.2
5
96
0
53
22
61
16
0
1.34
26824--26870
15
3.2
15
75
6
51
53
21
0
25
1.46
27021--27056
2
18.0
2
100
0
72
50
0
0
50
1.00
27807--27840
3
11.3
3
100
0
68
0
32
0
67
0.91
37680--37715
3
12.0
3
88
11
56
63
0
33
2
1.08
37677--37717
9
4.8
8
88
11
55
63
0
34
2
1.08
38449--38473
2
12.5
2
100
0
50
52
0
0
48
1.00
39668--39709
22
2.0
21
90
4
66
69
2
0
28
1.01
40672--40704
2
17.0
2
93
6
59
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44667--44699
17
1.9
17
93
0
57
45
0
3
51
1.16
44937--45045
51
2.1
51
91
0
173
51
4
3
40
1.40
46766--46823
27
2.1
27
93
0
98
27
3
25
43
1.71
46766--46832
27
2.5
27
87
0
80
23
5
23
46
1.74
47818--47864
2
23.5
2
100
0
94
51
0
0
48
1.00
57445--57502
29
2.0
29
86
0
80
15
34
25
24
1.95
57545--57572
14
2.0
14
100
0
56
21
42
28
7
1.79
57569--57643
33
2.3
33
88
4
107
28
24
38
9
1.86
57647--57731
29
2.9
29
94
0
143
21
29
35
14
1.92
57760--57784
12
2.1
12
100
0
50
16
36
8
40
1.77
57802--57887
29
3.0
29
98
0
163
20
31
33
13
1.92
61771--61979
76
2.8
76
88
0
294
20
23
32
23
1.98
62568--62611
17
2.6
17
85
7
63
56
29
0
13
1.38
62563--62613
9
6.2
8
78
17
52
58
27
0
13
1.36
85465--85490
6
4.3
6
100
0
52
15
0
15
69
1.20
100157--100190
6
5.7
6
100
0
68
35
0
64
0
0.94
104861--105016
64
2.4
65
78
11
169
35
19
19
25
1.95
105390--105470
29
2.8
29
86
3
119
44
16
19
19
1.87
105555--105603
15
3.3
15
85
5
64
16
22
30
30
1.96
107211--107267
2
28.5
2
100
0
114
49
0
0
50
1.00
111682--111706
13
1.9
13
100
0
50
16
20
16
48
1.82
115846--116383
216
2.5
215
92
1
902
35
14
18
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116187--116280
42
2.3
41
81
1
107
24
23
22
29
1.99
116868--117180
53
5.9
53
86
2
405
29
21
26
21
1.99
118857--118945
2
44.5
2
100
0
178
49
0
0
50
1.00
122405--122766
41
8.7
41
79
6
390
27
19
19
33
1.96
122404--122766
83
4.4
83
87
2
480
28
19
19
33
1.96
127504--127562
21
2.8
21
81
0
64
18
6
18
55
1.64
127715--127939
43
5.3
43
84
3
283
28
22
21
27
1.99
127715--127939
85
2.6
86
84
3
276
28
22
21
27
1.99
128624--128683
20
2.9
21
90
7
95
30
25
26
18
1.98
130035--130247
103
2.1
103
95
0
381
26
13
23
36
1.92
130264--130354
23
4.0
23
91
0
137
20
29
25
24
1.99
131565--131994
202
2.1
201
82
1
511
35
18
14
32
1.90
131565--132031
201
2.3
201
80
3
476
35
18
13
32
1.90
141301--141347
20
2.2
22
81
11
62
21
6
19
53
1.67

Tables:   1

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