Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003160.1 Hibiscus syriacus cultivar Beakdansim tig00006652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90057

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8322--8401
40
2.0
40
82
0
97
21
27
26
25
1.99
9426--9467
16
2.6
16
92
0
66
23
28
11
35
1.91
21452--21510
31
1.9
31
86
6
84
42
11
5
40
1.64
28650--28684
16
2.3
15
90
5
52
51
2
2
42
1.31
29819--29904
21
3.8
22
72
7
66
36
1
1
61
1.11
29867--29904
2
19.0
2
88
0
58
47
2
0
50
1.15
31224--31257
10
3.4
10
87
0
50
20
5
0
73
1.04
40681--40708
11
2.5
11
100
0
56
92
7
0
0
0.37
41312--41354
1
43.0
1
80
0
50
90
9
0
0
0.45
41311--41354
7
6.7
7
87
7
58
88
11
0
0
0.51
41559--42020
105
4.4
105
93
0
744
32
25
19
22
1.97
42482--42516
16
2.3
15
90
5
52
51
2
2
42
1.31
43652--43743
2
48.0
2
77
8
75
40
2
1
56
1.18
43605--43714
46
2.3
48
82
11
122
31
4
0
62
1.21
44023--44110
27
3.3
25
72
12
68
27
10
1
61
1.35
45676--45712
3
12.7
3
94
5
67
32
0
0
67
0.91
46125--46164
21
2.0
20
95
5
71
32
17
10
40
1.83
49315--49340
2
13.0
2
100
0
52
50
0
0
50
1.00
55232--55258
14
1.9
14
100
0
54
51
0
0
48
1.00
59588--59646
20
3.0
20
70
9
57
40
27
11
20
1.87
64554--64697
30
4.7
30
78
3
135
30
27
11
30
1.92
71102--71159
23
2.5
23
88
0
80
20
8
37
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72920--72954
2
17.5
2
100
0
70
51
0
0
48
1.00
77818--77844
2
13.5
2
100
0
54
51
0
0
48
1.00
77994--78064
22
3.3
22
92
5
110
28
11
23
36
1.89
78233--78276
19
2.2
20
88
4
63
27
22
11
38
1.88
78231--78277
20
2.3
21
82
10
62
27
21
10
40
1.86
81375--81458
33
2.5
33
88
3
116
13
11
34
40
1.81
82016--82062
16
2.7
18
90
6
71
29
29
6
34
1.82
82860--82912
24
2.2
24
96
0
97
45
0
18
35
1.50
87845--87915
33
2.2
32
92
7
119
16
21
5
56
1.61
87855--87916
18
3.6
18
66
18
51
17
20
6
54
1.65

Tables:   1

The End!