genome.fa.s3161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003161.1 Hibiscus syriacus cultivar Beakdansim tig00006653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  221518

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3647--3829	91	2.0	91	89	0	276	21	27	21	28	1.99
5408--5476	35	1.9	36	85	2	95	31	2	34	30	1.73
10450--10483	17	1.9	18	88	5	52	64	0	20	14	1.28
10628--10656	15	2.0	15	93	6	51	0	20	0	79	0.74
10681--10729	17	2.9	17	82	14	57	0	12	10	77	0.99
11105--11188	35	2.4	36	82	4	100	33	2	34	29	1.71
20051--20086	18	1.9	18	88	5	54	0	11	11	77	0.99
20062--20121	11	5.4	11	78	9	68	0	6	8	85	0.76
20051--20087	20	1.9	20	88	5	58	0	10	10	78	0.97
20070--20114	13	3.6	13	94	5	76	0	8	8	82	0.85
22565--22612	19	2.5	19	100	0	96	56	4	10	29	1.52
25871--25923	23	2.2	24	90	3	81	9	16	11	62	1.54
29614--29650	18	2.1	18	100	0	74	21	32	0	45	1.52
37234--37285	6	8.7	6	76	16	54	0	21	0	78	0.74
37239--37305	9	7.2	9	84	15	84	1	20	1	76	0.95
37237--37302	27	2.3	30	87	12	102	1	19	1	77	0.93
37261--37307	17	2.8	16	76	20	51	2	19	2	76	0.99
37234--37308	27	2.9	25	76	23	75	1	20	1	77	0.92
45461--45526	28	2.4	28	80	10	80	7	16	13	62	1.53
46300--46482	91	2.0	91	92	2	305	28	22	28	20	1.98
47765--47798	14	2.5	14	95	4	61	76	14	8	0	1.01
52133--52160	12	2.3	12	100	0	56	7	25	7	60	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54762--54863	36	2.9	36	92	1	161	30	35	4	29	1.79
55316--55362	14	3.1	15	75	12	51	72	6	19	2	1.17
58862--58946	11	7.2	11	72	22	66	31	36	3	28	1.74
58859--58963	36	2.9	36	95	1	185	30	36	4	28	1.78
61710--61775	28	2.4	28	80	10	80	7	16	13	62	1.53
68523--68580	8	7.0	8	81	14	73	0	6	10	82	0.83
68523--68580	16	3.5	17	86	9	84	0	6	10	82	0.83
73108--73158	14	3.5	14	91	5	75	0	11	9	78	0.97
73120--73172	12	4.5	12	73	4	54	0	7	7	84	0.76
74741--74777	15	2.4	16	95	4	67	62	5	18	13	1.50
75748--75807	15	3.4	18	82	17	81	78	11	10	0	0.97
75770--75807	20	1.9	20	88	0	58	78	10	10	0	0.95
80254--80287	8	4.0	8	85	14	50	82	11	5	0	0.83
80254--80298	18	2.3	20	92	7	76	77	13	8	0	0.98
85317--85359	14	3.1	14	90	3	61	23	39	0	37	1.55
85322--85361	13	3.0	13	88	3	53	22	42	0	35	1.54
85769--85820	15	3.5	15	75	17	54	80	1	17	0	0.80
88184--88230	13	3.2	16	80	17	57	17	19	0	63	1.30
88205--88233	13	2.3	13	94	5	51	13	17	0	68	1.20
90725--90759	12	3.0	12	87	4	54	62	8	17	11	1.52
95598--95681	35	2.4	36	82	4	100	30	2	36	29	1.70
98833--98879	20	2.3	20	96	0	85	12	17	29	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100673--100706	17	1.9	18	88	5	52	64	0	20	14	1.28
101322--101405	35	2.4	36	82	4	100	30	2	36	29	1.70
106442--106488	13	3.2	16	80	17	57	17	19	0	63	1.30
106463--106491	13	2.3	13	94	5	51	13	17	0	68	1.20
110026--110084	25	2.4	25	91	0	100	13	25	0	61	1.33
110594--110662	33	2.1	33	83	5	86	31	1	36	30	1.67
115077--115157	35	2.3	35	80	14	96	29	2	37	30	1.71
118965--119011	2	23.5	2	100	0	94	51	0	0	48	1.00
121080--121150	26	2.7	26	88	0	106	29	19	30	19	1.97
127398--127430	12	2.8	12	100	0	66	0	12	9	78	0.95
130343--130381	20	2.0	19	90	5	60	23	5	38	33	1.77
134338--134394	27	2.1	27	83	6	71	12	15	12	59	1.61
135195--135265	26	2.7	26	93	0	115	30	19	30	18	1.96
136551--136609	9	6.9	9	76	18	63	79	0	16	3	0.86
136547--136608	17	3.7	16	82	8	70	80	0	16	3	0.83
136547--136611	21	3.2	20	82	6	78	81	0	15	3	0.81
136551--136608	8	6.9	8	78	9	62	79	0	17	3	0.87
136547--136619	30	2.5	28	80	10	85	79	0	16	4	0.88
136547--136616	16	4.5	16	76	13	67	80	0	15	4	0.87
139474--139532	30	1.9	31	83	10	77	28	10	10	50	1.68
140407--140457	21	2.5	21	90	6	79	35	11	5	47	1.65
141257--141321	12	5.6	12	89	3	89	81	10	7	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145659--146817	578	2.0	578	93	0	1960	31	23	21	23	1.98
154301--154346	23	2.0	23	83	8	58	36	6	8	47	1.60
156136--156313	91	2.0	91	80	4	207	21	26	22	29	1.99
161929--161980	19	2.6	21	90	6	81	46	7	13	32	1.72
165176--165200	8	3.1	8	100	0	50	0	24	0	76	0.80
165556--165594	20	1.9	21	84	5	53	33	2	35	28	1.71
165931--165974	21	2.2	21	92	8	74	47	6	11	34	1.66
171491--171539	22	2.3	21	89	3	80	28	4	28	38	1.75
175313--175364	19	2.6	21	90	6	81	46	7	13	32	1.72
176217--176266	21	2.5	21	83	6	68	46	10	12	32	1.74
174698--176511	903	2.0	901	89	5	2809	34	13	23	28	1.92
179484--179528	18	2.3	20	82	17	60	2	20	0	77	0.87
180238--180289	19	2.6	21	90	6	81	46	7	13	32	1.72
180527--182352	912	2.0	912	96	0	3348	33	16	18	31	1.93
183942--183986	11	4.1	11	82	5	56	71	4	11	13	1.29
183942--183983	22	1.9	22	90	9	68	69	4	11	14	1.34
188171--188196	10	2.6	10	100	0	52	0	0	7	92	0.39
188515--188559	11	4.1	11	82	5	56	71	4	11	13	1.29
188515--188556	22	1.9	22	90	9	68	69	4	11	14	1.34
190846--190897	19	2.6	20	90	6	79	48	7	11	32	1.68
192260--192291	12	2.4	14	85	15	50	59	0	28	12	1.34
192533--192567	17	2.1	17	94	0	61	0	20	5	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195184--195230	25	1.9	24	86	4	67	76	6	17	0	0.98
195191--195230	6	6.5	6	82	5	53	77	2	20	0	0.88
199265--199325	30	2.0	30	100	0	122	29	22	9	37	1.87
200980--201020	22	1.9	21	85	5	55	24	2	31	41	1.68
207762--207812	19	2.6	20	87	3	68	43	5	13	37	1.69
207790--208193	201	2.0	201	99	0	799	24	15	28	30	1.96
209000--209045	20	2.2	20	78	21	51	45	4	19	30	1.70
209290--209338	16	2.9	16	84	6	53	16	22	0	61	1.34
213312--213350	10	4.2	9	87	9	53	76	2	20	0	0.90
213317--213347	5	6.2	5	92	0	53	77	3	19	0	0.90
215917--215952	15	2.4	15	90	0	54	19	25	0	55	1.43

Tables:   1

The End!