genome.fa.s3164.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003164.1 Hibiscus syriacus cultivar Beakdansim tig00006658_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105912

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5276--5329	26	2.0	27	89	3	83	59	11	11	18	1.60
10655--10679	7	3.6	7	100	0	50	44	16	12	28	1.83
13816--13853	4	10.0	4	88	11	62	50	0	0	50	1.00
15869--15903	16	2.2	16	89	0	52	77	5	8	8	1.13
24064--24200	44	3.2	44	89	5	217	32	18	13	35	1.90
24192--24377	63	3.0	63	82	6	175	29	22	18	30	1.97
24586--24725	69	2.0	69	97	0	262	57	2	6	34	1.36
28598--28676	29	2.7	29	88	0	113	22	30	31	15	1.95
28797--28855	23	2.5	24	86	8	86	22	20	15	42	1.89
29070--29154	39	2.2	39	97	0	161	38	2	16	42	1.61
29237--29289	28	1.9	27	88	3	79	32	1	16	49	1.57
29195--29270	39	1.9	40	81	7	93	39	2	11	46	1.55
29236--29300	27	2.3	29	82	10	82	36	1	15	46	1.55
29418--29477	29	2.0	30	93	3	104	38	0	5	56	1.21
29448--29547	44	2.3	44	98	0	191	47	2	10	41	1.48
29550--29589	21	1.9	21	100	0	80	27	0	15	57	1.38
32008--32052	21	2.1	22	84	12	58	55	4	2	37	1.32
32024--32062	17	2.3	17	90	0	60	61	0	0	38	0.96
32062--32151	26	3.6	26	86	10	125	42	11	2	44	1.52
32068--32221	49	3.1	51	79	14	169	45	11	1	41	1.51
32680--32872	49	3.7	50	82	14	255	45	12	0	41	1.46
32740--32824	21	4.2	20	65	22	52	45	11	0	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32730--32855	60	2.1	60	95	1	227	44	13	0	42	1.44
32670--32872	109	1.9	108	96	0	361	45	12	0	41	1.45
36125--36151	14	1.9	14	100	0	54	74	14	3	7	1.18
36117--36150	17	2.1	16	88	5	50	70	17	5	5	1.28
36587--36635	21	2.3	21	82	3	62	53	14	0	32	1.41
37679--37718	21	1.9	21	100	0	80	57	15	0	27	1.38
37706--37790	39	2.2	39	95	0	152	42	15	2	40	1.60
37706--37814	39	2.8	38	87	5	112	44	15	1	37	1.57
38026--38085	23	2.6	23	89	0	93	41	16	21	20	1.90
38205--38283	29	2.7	29	88	0	113	16	30	29	24	1.96
38532--38603	29	2.4	30	82	13	87	8	50	20	20	1.74
39380--39466	24	3.7	24	92	3	142	28	17	13	40	1.88
44283--44357	18	4.3	18	70	14	59	34	10	10	44	1.74
44493--44671	20	8.9	20	73	12	125	40	21	21	17	1.92
44577--44684	40	2.7	40	92	0	180	37	23	22	16	1.93
44551--44671	60	2.0	61	90	6	192	37	23	22	17	1.94
44555--44684	20	6.4	20	78	8	138	36	24	21	16	1.94
44795--44845	6	8.5	6	100	0	102	33	50	15	0	1.44
45154--45216	6	10.5	6	100	0	126	0	15	50	33	1.45
45329--45464	20	6.7	20	95	1	236	15	20	25	38	1.92
45455--45508	20	2.7	20	94	0	90	11	20	18	50	1.77
45495--45546	19	2.7	19	90	3	77	15	17	25	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48032--48064	2	16.5	2	100	0	66	51	0	0	48	1.00
49739--49811	32	2.4	31	78	14	82	41	1	4	53	1.28
50368--50415	23	2.1	23	84	0	60	37	12	16	33	1.86
50798--50849	23	2.3	22	90	6	77	44	19	1	34	1.62
50808--50870	23	2.7	23	90	0	90	38	19	6	36	1.77
51695--51737	20	2.3	18	85	14	61	20	16	11	51	1.75
51976--52424	229	2.0	228	94	0	781	39	7	7	45	1.60
53328--53379	3	17.3	3	87	0	77	38	32	28	0	1.57
63117--63152	18	2.1	17	94	5	63	13	0	0	86	0.58
63655--63700	15	2.8	16	80	12	58	67	0	2	30	1.03
65713--65757	3	15.0	3	85	0	63	40	0	0	60	0.97
65701--65759	15	3.7	15	84	10	73	40	1	0	57	1.09
65717--65780	9	6.9	9	73	7	56	46	1	0	51	1.10
65713--65757	18	2.5	18	96	0	81	40	0	0	60	0.97
66962--67011	25	2.0	25	84	0	64	22	4	6	68	1.29
67742--67772	2	16.0	2	93	6	55	51	0	0	48	1.00
68742--68829	46	1.9	46	90	4	142	38	10	19	31	1.85
69749--69780	3	11.3	3	87	12	50	34	0	0	65	0.93
70449--70503	20	2.8	20	91	5	76	25	30	12	30	1.93
70835--71109	146	1.9	146	83	1	354	32	20	26	21	1.98
77271--77302	3	10.3	3	93	6	55	62	0	34	3	1.11
78427--78503	9	9.8	8	81	14	74	76	0	11	11	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78426--78515	9	9.8	9	74	19	71	77	0	12	10	0.98
78446--78489	22	2.0	22	86	8	63	72	0	13	13	1.12
78430--78504	39	1.9	38	86	7	107	76	0	12	12	1.04
78426--78545	9	14.5	8	71	20	52	79	0	11	8	0.98
78498--78532	14	2.5	14	90	0	61	85	0	14	0	0.59
79825--80106	55	5.1	55	87	5	435	28	14	28	28	1.96
80102--80602	52	9.6	52	93	0	849	28	16	25	29	1.96
80860--80891	3	11.3	3	87	12	50	34	0	0	65	0.93
81560--81614	20	2.8	20	91	5	76	25	30	12	30	1.93
81946--82220	146	1.9	146	80	1	327	32	20	25	21	1.98
87004--87042	14	2.8	14	85	11	53	76	0	20	2	0.90
90464--90663	75	2.7	72	81	7	206	32	16	21	29	1.95
90541--90712	75	2.4	71	82	6	195	31	16	22	28	1.96
92599--92660	29	2.1	29	87	6	88	20	16	24	38	1.92
92639--93077	73	6.0	73	90	0	664	29	18	20	31	1.96
93470--93517	3	16.0	3	91	0	78	37	0	0	62	0.95
94743--94792	25	2.0	25	88	0	73	20	6	6	68	1.33
95521--95550	2	15.5	2	93	6	53	50	0	0	50	1.00
98457--98542	42	2.0	42	100	0	172	34	22	20	22	1.96
98518--98642	41	3.0	42	83	5	139	38	20	18	23	1.93
101639--101707	28	2.4	28	87	2	102	40	0	24	34	1.56
101649--101703	7	7.9	7	85	0	74	32	0	27	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103260--103508	111	2.2	112	84	4	317	27	21	12	39	1.88

Tables:   1

The End!