genome.fa.s3165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003165.1 Hibiscus syriacus cultivar Beakdansim tig00006660_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47626

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2235--2271	6	6.2	6	93	0	65	35	45	16	2	1.61
11761--11823	11	5.9	11	69	14	51	57	3	1	38	1.24
12318--12370	21	2.5	22	81	9	65	41	28	5	24	1.77
12338--12372	14	2.5	13	90	9	52	42	28	2	25	1.69
13389--13454	30	2.3	28	77	12	71	68	0	16	15	1.22
13710--13815	23	4.6	23	67	14	58	68	0	5	24	1.17
14159--14266	37	2.9	37	97	0	198	32	12	13	40	1.83
14926--15501	83	6.9	83	81	2	600	26	17	23	32	1.96
14927--15501	167	3.4	164	84	3	668	25	17	24	32	1.96
14876--15501	250	2.5	251	81	2	668	25	17	23	33	1.96
15503--15976	124	3.8	124	88	2	666	25	19	24	30	1.98
17993--18060	35	1.9	36	87	3	102	58	8	13	19	1.60
22246--22306	16	4.1	16	72	23	60	49	1	0	49	1.10
23859--23897	20	2.0	20	94	0	69	51	17	12	17	1.76
23878--23911	14	2.4	14	90	0	50	47	26	14	11	1.79
23924--23955	14	2.3	14	100	0	64	9	15	31	43	1.78
25176--25271	42	2.3	42	87	0	138	30	35	18	15	1.92
25388--25437	21	2.4	21	93	0	82	20	14	32	34	1.92
25849--25965	21	5.6	21	80	8	139	21	35	19	23	1.96
25847--25965	42	2.8	42	90	0	184	21	36	19	23	1.95
27068--27470	207	1.9	206	88	4	607	27	8	22	41	1.82
27675--27732	19	3.0	20	89	5	100	39	20	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30328--30379	24	2.2	24	82	0	59	36	17	19	26	1.94
31557--31598	22	1.9	22	90	9	68	14	11	4	69	1.34
31917--31955	18	2.2	18	95	4	71	92	7	0	0	0.39
31917--31955	1	39.0	1	84	0	51	92	7	0	0	0.39
38213--38254	22	1.9	22	90	9	68	14	11	4	69	1.34
39088--39205	40	2.9	40	82	6	141	36	12	21	29	1.90
39070--39196	60	2.1	59	81	9	143	37	14	21	26	1.92
39087--39219	20	6.6	21	74	10	89	33	12	21	31	1.91
43168--43213	22	2.1	22	88	8	67	41	4	17	36	1.69

Tables:   1

The End!