genome.fa.s3168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003168.1 Hibiscus syriacus cultivar Beakdansim tig00006663_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72075

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6184--6243	3	20.0	3	86	6	86	38	0	0	61	0.96
11529--11560	15	2.1	15	94	0	55	25	18	9	46	1.79
18888--18984	7	13.7	7	71	18	76	82	0	16	1	0.73
18873--18984	17	6.5	17	79	10	113	81	0	17	0	0.75
18885--18985	29	3.5	27	83	15	114	81	0	17	0	0.75
18877--18984	16	6.4	16	77	12	101	81	0	17	0	0.74
19828--20184	93	3.8	94	93	2	594	29	15	20	35	1.93
20917--21521	112	5.5	111	86	5	836	38	13	19	28	1.89
20917--21521	218	2.7	219	88	4	894	38	13	19	28	1.89
21763--21825	3	21.0	3	87	6	83	39	0	0	60	0.97
34939--34988	21	2.4	21	93	0	82	16	20	32	32	1.94
34940--34994	21	2.6	20	85	5	65	16	20	30	32	1.94
35787--35872	22	3.7	23	76	10	77	36	0	4	59	1.18
35858--35900	21	2.0	23	86	9	63	34	2	0	62	1.08
39838--39875	15	2.5	15	91	0	58	39	7	23	28	1.83
40006--40104	25	4.0	25	86	2	137	23	19	23	34	1.97
41654--41695	17	2.5	17	92	0	66	42	23	11	21	1.86
41737--41819	29	2.9	29	73	10	80	34	16	4	43	1.70
42116--42155	19	2.2	18	83	12	55	40	0	0	60	0.97
42265--42312	21	2.3	20	82	3	60	41	2	0	56	1.11
42564--42615	21	2.5	21	81	3	61	38	19	25	17	1.93
42604--42717	20	5.7	20	83	6	113	31	25	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42601--42717	61	1.9	61	85	0	162	33	24	17	23	1.97
43271--43315	19	2.4	19	92	0	72	48	26	15	8	1.74
43311--43352	19	2.2	19	91	0	66	14	23	16	45	1.84
43319--43456	19	7.7	19	70	18	89	13	24	18	43	1.86
43344--43431	33	2.6	33	89	1	131	13	27	19	39	1.89
43396--43454	20	3.0	20	84	0	73	13	22	18	45	1.84
45547--45626	42	1.9	42	84	0	106	21	38	17	22	1.93
47157--47209	19	2.8	19	94	0	88	47	18	20	13	1.82
47214--47364	19	8.7	19	65	21	89	14	23	20	41	1.89
47218--47344	33	3.9	32	89	8	202	14	23	19	42	1.88
47211--47343	66	2.0	66	98	0	257	15	23	19	41	1.90
49636--49660	12	2.1	12	100	0	50	0	28	0	72	0.86
49835--49888	24	2.2	24	90	0	81	40	20	16	22	1.91
50628--50722	20	4.7	20	78	7	93	22	17	26	33	1.96
50649--50743	41	2.3	41	85	3	120	18	20	25	35	1.95
50793--50833	21	2.0	21	85	0	55	34	31	17	17	1.93
50987--51045	25	2.3	26	79	2	66	42	6	1	49	1.39
51382--51441	31	1.9	31	86	6	86	48	0	10	41	1.37
57638--57687	23	2.1	24	85	10	68	70	0	2	28	0.99
57746--57779	4	8.2	4	87	6	50	73	2	0	23	0.97
57742--57780	17	2.3	17	86	0	60	71	2	0	25	0.98
58681--58944	133	2.0	134	85	2	361	26	17	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58971--59363	67	5.9	66	85	4	488	40	15	19	25	1.90
58971--59406	133	3.3	131	87	2	590	39	14	19	26	1.90
59234--59359	36	3.6	36	69	16	95	37	15	20	26	1.92
58971--59363	198	2.0	198	87	3	565	40	15	19	25	1.90
59478--59593	38	3.1	38	80	5	128	47	10	13	28	1.76
59477--59592	37	3.1	37	82	2	135	46	10	14	28	1.77
60791--60832	16	2.6	16	82	14	59	0	11	7	80	0.88
60793--60853	12	5.3	11	73	15	52	1	9	6	81	0.92
60793--60844	16	3.1	16	76	15	52	1	9	5	82	0.90
63176--63230	19	2.7	20	75	20	60	30	20	14	34	1.92
68139--68174	19	1.9	18	88	5	54	61	0	2	36	1.11
68607--68661	16	3.8	16	71	26	59	5	23	5	65	1.35
68609--68671	26	2.5	26	94	2	110	3	22	6	68	1.27

Tables:   1

The End!