genome.fa.s3169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003169.1 Hibiscus syriacus cultivar Beakdansim tig00006665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91976

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3947--4128	95	1.9	95	89	2	285	32	18	19	29	1.96
4654--4690	19	2.0	18	89	5	56	32	10	0	56	1.34
5369--5693	101	3.2	101	92	0	542	35	24	19	20	1.96
5633--5736	43	2.4	43	96	0	190	40	25	17	16	1.90
6174--6326	71	2.2	71	92	2	263	26	21	13	38	1.90
6174--6326	36	4.3	36	91	4	258	26	21	13	38	1.90
6405--6468	33	1.9	33	93	0	110	20	21	15	42	1.89
7026--7064	18	2.2	17	86	4	51	38	0	5	56	1.22
7047--7071	12	2.1	12	100	0	50	24	0	8	68	1.16
8313--8371	19	3.2	19	76	9	59	28	1	3	66	1.18
13051--13103	3	17.7	3	96	0	79	5	32	0	62	1.19
14070--14104	17	2.1	17	88	0	52	37	5	2	54	1.39
14428--14475	18	2.7	18	80	9	62	54	4	0	41	1.20
16180--16204	3	8.3	3	100	0	50	0	0	32	68	0.90
16379--16412	2	17.0	2	100	0	68	50	0	0	50	1.00
16536--16570	3	11.7	3	100	0	70	31	0	0	68	0.90
17998--18027	14	2.1	14	93	0	51	36	0	0	63	0.95
27456--27492	14	2.6	14	91	0	56	59	18	13	8	1.58
27675--27720	14	3.3	14	87	0	65	67	17	4	10	1.37
28541--28596	17	3.4	17	81	18	66	55	0	0	44	0.99
28986--29038	2	27.5	2	77	7	56	50	0	0	49	1.00
29149--29222	35	2.1	35	89	0	112	18	41	10	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30907--30959	21	2.5	22	87	9	74	33	16	22	26	1.96
32085--32163	32	2.4	33	81	12	92	49	1	1	48	1.17
32129--32163	18	1.9	18	88	0	52	60	0	0	40	0.97
32127--32179	23	2.3	23	90	0	79	54	0	1	43	1.11
32246--32277	8	4.0	8	100	0	64	50	0	0	50	1.00
32270--32338	19	3.6	19	72	14	61	50	1	0	47	1.09
32333--32377	23	2.0	23	86	0	63	53	2	2	42	1.25
32418--32497	28	2.7	29	81	13	74	48	5	1	45	1.32
34135--34301	12	14.5	11	69	23	55	17	5	2	73	1.15
34175--34301	10	12.3	10	68	21	50	15	7	2	74	1.13
35742--35807	27	2.4	27	87	5	89	45	25	9	19	1.80
36281--36322	17	2.5	17	88	7	59	40	0	0	59	0.97
37102--37167	19	3.5	19	87	0	105	63	3	4	28	1.29
37083--37175	38	2.4	40	83	7	129	66	3	4	25	1.25
39175--39236	3	20.3	3	90	3	97	64	0	1	33	1.03
39378--39666	120	2.4	123	82	8	342	24	20	14	40	1.90
39584--40132	113	4.9	113	91	1	823	28	18	15	37	1.92
40963--41351	83	4.7	83	96	0	679	37	22	12	27	1.90
40865--41351	166	2.9	166	90	3	740	36	22	12	27	1.91
40865--41351	249	1.9	253	91	4	793	36	22	12	27	1.91
42496--42557	17	3.6	17	79	18	74	0	16	0	83	0.64
42498--42557	5	12.6	5	75	21	58	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42494--42565	35	2.1	35	87	10	103	0	16	1	81	0.75
42498--42562	13	4.9	13	85	11	80	0	15	1	83	0.73
42494--42557	30	2.1	30	86	11	87	0	17	0	82	0.66
42495--42563	17	4.1	15	77	22	66	0	14	1	84	0.70
42498--42553	11	5.3	10	78	18	60	0	16	0	83	0.64
49874--49905	15	2.1	15	94	0	55	46	9	18	25	1.79
55338--55424	3	28.3	3	88	4	129	64	0	1	34	1.01
55334--55424	40	2.3	40	90	1	139	63	0	1	35	1.02
55338--55427	37	2.4	39	81	10	125	64	0	1	34	1.01
55755--55882	51	2.5	50	83	3	159	17	32	31	18	1.95
57014--57048	18	1.9	18	94	0	61	37	22	14	25	1.92
61130--61254	49	2.5	51	81	5	166	30	23	21	24	1.99
61266--61393	51	2.5	51	84	1	150	18	29	33	17	1.95
62584--62643	29	2.1	29	100	0	120	25	28	10	36	1.88
66621--66665	22	2.0	22	100	0	90	31	8	22	37	1.85
67342--67384	21	2.0	21	100	0	86	37	20	23	18	1.94
69909--69934	2	13.0	2	100	0	52	50	0	0	50	1.00
70130--70173	16	2.8	16	96	0	79	29	0	9	61	1.27
71944--71986	21	2.0	21	81	0	50	30	30	25	13	1.94
75508--75550	21	2.0	21	81	0	50	30	30	25	13	1.94
75530--75683	69	2.2	69	88	1	220	27	27	27	17	1.98
75986--76085	29	3.5	29	95	1	175	39	10	12	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76100--76159	30	2.0	31	90	3	95	36	6	23	33	1.81
76379--76445	22	3.0	22	100	0	134	19	26	26	26	1.99
82455--82606	68	2.2	68	88	1	216	27	27	26	17	1.98
82907--83006	29	3.5	29	95	1	175	39	10	12	39	1.76
83021--83080	30	2.0	31	90	3	95	36	6	23	33	1.81
83300--83366	22	3.0	22	100	0	134	19	26	26	26	1.99
85885--85952	33	2.0	35	85	5	95	47	2	1	48	1.26
85891--85953	15	4.1	15	78	13	65	46	1	1	50	1.20
86232--86281	26	1.9	26	83	0	64	66	4	0	30	1.10
87106--87158	19	2.7	20	85	5	81	26	15	37	20	1.92
88434--88483	22	2.3	22	82	0	64	24	18	12	46	1.82
89331--89357	7	3.9	7	100	0	54	11	44	0	44	1.39

Tables:   1

The End!