genome.fa.s3172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003172.1 Hibiscus syriacus cultivar Beakdansim tig00006669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126992

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14503--15241	369	2.0	369	98	0	1442	29	13	18	37	1.89
15579--15631	21	2.5	21	84	0	70	20	26	18	33	1.96
15621--15712	20	4.6	20	80	2	121	36	19	21	21	1.95
15891--15952	18	3.0	21	72	18	58	25	37	16	20	1.93
16343--16389	20	2.3	20	81	0	58	12	14	23	48	1.78
18276--18387	20	5.6	20	92	0	179	40	21	16	21	1.92
18279--18423	20	7.6	19	80	15	68	41	20	18	20	1.91
18413--18565	34	4.4	34	68	14	112	15	20	21	42	1.89
18432--18585	20	8.4	20	77	18	120	16	18	22	42	1.89
18537--18595	20	3.0	20	89	0	64	15	18	23	42	1.88
19070--19152	42	2.0	42	85	0	112	21	37	19	21	1.94
19062--19148	21	4.2	20	71	8	66	20	35	19	24	1.96
20509--20544	14	2.6	14	90	0	54	30	0	22	47	1.52
20680--20743	34	1.9	34	93	3	112	43	17	23	15	1.87
20765--20799	14	2.5	14	100	0	70	8	25	22	42	1.82
20791--20879	20	4.4	20	84	2	108	20	21	22	35	1.96
20791--20899	40	2.9	37	78	14	109	20	22	22	34	1.96
21897--22013	20	5.8	20	77	7	87	23	19	19	36	1.95
21905--22013	41	2.7	40	81	4	130	22	19	20	37	1.94
22010--22055	21	2.2	21	88	0	65	36	17	28	17	1.92
30760--30826	27	2.5	27	95	0	125	32	16	14	35	1.90
35648--35681	6	5.7	6	100	0	68	17	0	64	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35942--35969	12	2.3	12	100	0	56	64	7	0	28	1.20
37600--37630	3	10.3	3	100	0	62	35	0	0	64	0.94
46646--46671	5	5.2	5	100	0	52	23	57	19	0	1.40
46825--46850	5	5.2	5	100	0	52	23	57	19	0	1.40
50700--50758	21	2.8	21	100	0	118	18	23	25	32	1.97
52906--52940	13	2.8	12	91	8	52	40	5	11	42	1.65
52965--53009	20	2.2	21	84	11	58	64	13	2	20	1.38
53427--53486	23	2.7	23	82	5	79	31	16	18	33	1.93
56114--56159	9	4.6	10	79	15	51	39	26	28	6	1.81
56092--56147	20	2.8	21	86	10	73	42	23	28	5	1.76
56105--56159	20	2.8	20	88	5	76	40	25	29	5	1.78
56394--56449	24	2.3	24	100	0	112	37	16	17	28	1.91
61333--61378	2	23.5	2	95	4	85	50	0	0	50	1.00
62421--62530	2	55.0	2	100	0	220	50	50	0	0	1.00
62530--62561	2	16.0	2	100	0	64	50	0	0	50	1.00
62666--62726	29	2.1	30	90	3	97	62	16	4	16	1.49
62875--62926	20	2.6	20	96	0	95	38	26	13	21	1.90
62982--63175	20	9.6	20	76	8	76	35	25	19	19	1.95
62978--63175	40	5.0	39	81	4	200	35	26	19	19	1.95
62982--63174	60	3.2	60	83	0	251	35	25	19	19	1.95
63556--63626	33	2.2	33	92	0	115	11	22	18	47	1.80
63747--63801	14	3.6	14	73	21	56	41	23	25	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63747--63817	33	2.2	33	94	0	124	43	25	22	8	1.81
63813--63910	19	5.7	19	70	22	81	10	24	22	42	1.84
63835--63924	14	5.7	14	74	23	81	8	25	23	42	1.83
63818--63932	33	3.5	33	95	0	212	9	24	20	45	1.81
65629--66100	185	2.6	185	99	0	926	22	12	18	46	1.83
65629--66100	93	5.1	93	98	1	912	22	12	18	46	1.83
66144--66272	19	7.3	19	73	17	116	46	28	15	9	1.77
66180--66272	33	2.8	32	88	4	141	47	27	16	8	1.75
66144--66272	52	2.5	52	71	14	122	46	28	15	9	1.77
66268--66402	19	7.6	19	75	16	128	11	19	23	45	1.82
66290--66346	14	3.7	14	77	20	60	10	21	22	45	1.82
66273--66365	33	2.8	33	95	0	168	10	20	21	47	1.80
68303--68338	14	2.6	14	95	0	63	33	0	22	44	1.53
68445--68546	19	5.6	19	84	13	151	44	17	23	14	1.86
68575--68990	19	23.4	19	82	14	541	14	20	18	47	1.83
68537--68962	142	3.0	142	89	7	593	15	20	17	46	1.84
68575--68962	52	7.2	52	91	6	543	14	20	17	47	1.82
71270--71294	12	2.1	12	100	0	50	0	28	0	72	0.86
71469--71515	24	2.0	24	87	8	69	38	21	14	25	1.92
72196--72564	20	18.5	20	86	5	451	20	18	26	34	1.96
82242--82274	16	2.0	17	88	5	50	45	15	12	27	1.81
87812--87893	21	3.9	21	71	10	78	24	24	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87883--87934	21	2.5	21	87	3	70	38	17	23	21	1.93
87868--88079	41	5.2	41	70	11	121	32	19	19	28	1.96
87944--88016	21	3.5	21	79	3	76	23	21	17	36	1.94
88006--88099	20	4.7	20	85	2	134	39	19	21	20	1.93
88006--88099	41	2.3	41	88	1	136	39	19	21	20	1.93
88621--88705	19	4.7	19	74	15	81	44	23	21	10	1.83
88706--88827	33	3.5	33	83	8	145	11	22	19	46	1.81
88730--88825	20	5.2	20	70	21	82	12	22	18	45	1.83
90519--90823	94	3.3	94	93	2	485	22	12	18	46	1.82
90820--90877	24	2.4	24	100	0	116	36	15	8	39	1.78
91292--91358	21	3.2	21	66	6	55	23	35	20	19	1.95
91240--91358	42	2.8	42	81	5	107	22	36	18	22	1.95
92709--92744	14	2.6	14	95	0	63	33	0	22	44	1.53
92851--92901	14	3.1	17	72	21	54	45	17	23	13	1.84
92851--92944	33	2.8	33	88	3	136	45	21	20	12	1.84
92914--92959	19	2.4	19	96	0	83	45	26	15	13	1.82
92959--93118	33	4.8	33	96	0	293	11	24	19	45	1.83
92980--93100	14	7.6	14	68	24	62	10	24	19	44	1.83
92955--93118	19	9.8	17	67	25	82	10	24	19	45	1.82
96505--96556	20	2.5	21	87	3	70	21	23	17	38	1.93
105592--105739	42	3.5	43	80	10	173	51	6	16	25	1.69
106091--106275	43	4.3	43	81	2	203	51	5	16	25	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106091--106390	85	3.5	84	76	10	234	54	5	13	27	1.61
106112--106390	87	3.2	83	76	11	240	54	5	11	27	1.59
106336--106369	15	2.4	14	90	5	50	73	0	0	26	0.83
107956--108162	114	1.8	115	85	3	292	54	3	11	30	1.52
108815--108926	30	3.8	30	87	5	149	37	1	4	56	1.30
108977--109023	19	2.5	18	82	6	58	48	0	0	51	1.00
108978--109022	20	2.4	19	81	7	56	48	0	0	51	1.00
114817--115058	119	2.0	120	91	3	389	35	8	4	50	1.55
121075--121109	13	2.8	12	83	8	52	40	0	11	48	1.39

Tables:   1

The End!