Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003173.1 Hibiscus syriacus cultivar Beakdansim tig00006676_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41565
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Found at i:1736 original size:28 final size:28
Alignment explanation
Indices: 1685--1743 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
1675 CAGAATATGC
1685 TCAAATCCTCCCTGCTGCTTTCAACTCT
1 TCAAATCCTCCCTGCTGCTTTCAACTCT
1713 TCAACATCCTCCCTGCTGC-TTCAACTCT
1 TCAA-ATCCTCCCTGCTGCTTTCAACTCT
1741 TCA
1 TCA
1744 GTGCGAGCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 16 0.53
29 14 0.47
ACGTcount: A:0.19, C:0.41, G:0.07, T:0.34
Consensus pattern (28 bp):
TCAAATCCTCCCTGCTGCTTTCAACTCT
Found at i:11841 original size:45 final size:47
Alignment explanation
Indices: 11776--11878 Score: 138
Period size: 45 Copynumber: 2.2 Consensus size: 47
11766 TGTTATTCAC
* *
11776 AAAAAGAAATCCTAACCGCATGATATCTAATTCGTATGC-TTGTTCG
1 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCATTATTCG
* *
11822 AAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCATTTATTCG
1 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA-TTATTCG
11869 AAAAACGAAA
1 AAAAA-GAAA
11879 ATAAATGACT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 27 0.55
46 8 0.16
47 11 0.22
48 3 0.06
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (47 bp):
AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCATTATTCG
Found at i:15163 original size:55 final size:54
Alignment explanation
Indices: 15108--15541 Score: 291
Period size: 55 Copynumber: 8.0 Consensus size: 54
15098 ATGCTTGAAA
* * * * *
15108 AATCTTCAAATGATGGGTCTGCTCCCTATTCTTTCAAGGAGTATA-AGACTCGAAA
1 AATCTTCAAA-AACGGGTCCGCTCCCTATTCATTCAAGGAGTATAGA-ACTCGAAC
* ** * * *
15163 AATATTCGGCAAACGTGTCCACTCCCTATTCATTCAGGGAGTATA-AGACTCGAAC
1 AATCTTC-AAAAACGGGTCCGCTCCCTATTCATTCAAGGAGTATAGA-ACTCGAAC
* * * **
15218 AATCTTCAATAAACGGGTCCACTCCATATTCATTCAGGGAGTATAGAACTTAAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCATTCAAGGAGTATAGAACTCGAAC
* * ** * *
15273 AATTTTCATAAAACGAGTCCGCTTTCTATTCCTTC-AGAGAGTATAGAACTAGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTCATTCAAG-GAGTATAGAACTCGAAC
* * ** * * * *
15328 AATCTTCAGCAAATGTTTCTGGTCCCTATTCGTTCAGGGAGTATA-AGACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTCATTCAAGGAGTATAGA-ACTCGAAC
* * *
15383 AATCTTCAACAAACGGGTCTGCTCTCTATTCCTTC-AGAGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTCATTCAAG-GAGTATAGAACTCGAAC
* *
15438 AATCTTCAACAAACGGGTTCGCTCTCTATTCCA-TC-AGAGAGTATAGAACTCG---
1 AATCTTCAA-AAACGGGTCCGCTCCCTATT-CATTCAAG-GAGTATAGAACTCGAAC
* *
15490 -ATCTTCAACAAATGGGTCCGCTCTCTATTGCA-TC-AGAGAGTATAGAACTCGA
1 AATCTTCAA-AAACGGGTCCGCTCCCTATT-CATTCAAG-GAGTATAGAACTCGA
15542 TCTTCATAAA
Statistics
Matches: 312, Mismatches: 55, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
51 48 0.15
54 3 0.01
55 255 0.82
56 6 0.02
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (54 bp):
AATCTTCAAAAACGGGTCCGCTCCCTATTCATTCAAGGAGTATAGAACTCGAAC
Found at i:15259 original size:110 final size:110
Alignment explanation
Indices: 15129--15541 Score: 378
Period size: 110 Copynumber: 3.8 Consensus size: 110
15119 GATGGGTCTG
* * ** * * *
15129 CTCCCTATTCTTTCAAGGAGTATAAGACTCGAAAAATATTCGGCAAACGTGTCCACTCCCTATTC
1 CTCCCTATTCATTCAGGGAGTATAAGACTCGAAAAATATTCAACAAACGAGTCCGCTCTCTATTC
* * *
15194 ATTCAGGGAGTATA-AGACTCGAACAATCTTCAATAAACGGGTCCA
66 CTTCAGAGAGTATAGA-ACTCGAACAATCTTCAACAAACGGGTCCA
* * * *
15239 CTCCATATTCATTCAGGGAGTAT-AGAACT-TAAACAATTTTCATA-AAACGAGTCCGCTTTCTA
1 CTCCCTATTCATTCAGGGAGTATAAG-ACTCGAAA-AATATTCA-ACAAACGAGTCCGCTCTCTA
* * * ** **
15301 TTCCTTCAGAGAGTATAGAACTAGAACAATCTTCAGCAAATGTTTCTG
63 TTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCA
* * * * * *
15349 GTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGGGTCTGCTCTCTATTC
1 CTCCCTATTCATTCAGGGAGTATAAGACTCGAAAAATATTCAACAAACGAGTCCGCTCTCTATTC
* *
15414 CTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCG
66 CTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCA
* * * * *
15459 CTCTCTATTCCA-TCAGAGAGTAT-AGAACTCG----ATCTTCAACAAATGGGTCCGCTCTCTAT
1 CTCCCTATT-CATTCAGGGAGTATAAG-ACTCGAAAAATATTCAACAAACGAGTCCGCTCTCTAT
* *
15518 TGCATCAGAGAGTATAGAACTCGA
64 TCCTTCAGAGAGTATAGAACTCGA
15542 TCTTCATAAA
Statistics
Matches: 249, Mismatches: 45, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
106 48 0.19
109 8 0.03
110 187 0.75
111 6 0.02
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (110 bp):
CTCCCTATTCATTCAGGGAGTATAAGACTCGAAAAATATTCAACAAACGAGTCCGCTCTCTATTC
CTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCA
Found at i:15427 original size:165 final size:165
Alignment explanation
Indices: 15185--15487 Score: 457
Period size: 165 Copynumber: 1.8 Consensus size: 165
15175 ACGTGTCCAC
*
15185 TCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAATAAACGGGTCCACTCCATATTCA
1 TCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGGGTCCACTCCATATTCA
* * * * *
15250 TTCAGGGAGTATAGAACTTAAACAATTTTCATA-AAACGAGTCCGCTTTCTATTCCTTCAGAGAG
66 TTCAGAGAGTATAGAACTCAAACAATCTTCA-ACAAACGAGTCCGCTCTCTATTCCATCAGAGAG
15314 TATAGAACTAGAACAATCTTCAGCAAATGTTTCTGG
130 TATAGAACTAGAACAATCTTCAGCAAATGTTTCTGG
* **
15350 TCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGGGTCTGCTCTC-TATTC
1 TCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGGGTCCACTC-CATATTC
* * * *
15414 CTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTTCGCTCTCTATTCCATCAGAGAG
65 ATTCAGAGAGTATAGAACTCAAACAATCTTCAACAAACGAGTCCGCTCTCTATTCCATCAGAGAG
15479 TATAGAACT
130 TATAGAACT
15488 CGATCTTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
164 1 0.01
165 121 0.98
166 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (165 bp):
TCCCTATTCATTCAGGGAGTATAAGACTCGAACAATCTTCAACAAACGGGTCCACTCCATATTCA
TTCAGAGAGTATAGAACTCAAACAATCTTCAACAAACGAGTCCGCTCTCTATTCCATCAGAGAGT
ATAGAACTAGAACAATCTTCAGCAAATGTTTCTGG
Found at i:15554 original size:51 final size:51
Alignment explanation
Indices: 15384--15547 Score: 247
Period size: 51 Copynumber: 3.1 Consensus size: 51
15374 GACTCGAACA
* *
15384 ATCTTCAACAAACGGGTCTGCTCTCTATTCCTTCAGAGAGTATAGAACTCG
1 ATCTTCAACAAACGGGTCCGCTCTCTATTCCATCAGAGAGTATAGAACTCG
*
15435 AACAATCTTCAACAAACGGGTTCGCTCTCTATTCCATCAGAGAGTATAGAACTCG
1 ----ATCTTCAACAAACGGGTCCGCTCTCTATTCCATCAGAGAGTATAGAACTCG
* *
15490 ATCTTCAACAAATGGGTCCGCTCTCTATTGCATCAGAGAGTATAGAACTCG
1 ATCTTCAACAAACGGGTCCGCTCTCTATTCCATCAGAGAGTATAGAACTCG
15541 ATCTTCA
1 ATCTTCA
15548 TAAAATGAAT
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
51 55 0.53
55 48 0.47
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (51 bp):
ATCTTCAACAAACGGGTCCGCTCTCTATTCCATCAGAGAGTATAGAACTCG
Found at i:15867 original size:17 final size:17
Alignment explanation
Indices: 15837--15871 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15827 TATCTTCATC
15837 TCAATGCTTCAATATCT
1 TCAATGCTTCAATATCT
15854 TCAAT-CTTCAAATATCT
1 TCAATGCTTC-AATATCT
15871 T
1 T
15872 TGGGAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.43
Consensus pattern (17 bp):
TCAATGCTTCAATATCT
Found at i:16931 original size:8 final size:8
Alignment explanation
Indices: 16903--17049 Score: 96
Period size: 8 Copynumber: 18.6 Consensus size: 8
16893 TGAACCCCCC
16903 TTTTT-AT
1 TTTTTCAT
16910 TTTTCTCTAT
1 TTTT-TC-AT
16920 TTTTTCA-
1 TTTTTCAT
16927 TTTTTCAT
1 TTTTTCAT
16935 TTTTCTC-T
1 TTTT-TCAT
*
16943 TTCTTC-T
1 TTTTTCAT
*
16950 TTCTTC-T
1 TTTTTCAT
16957 TTTTTCAT
1 TTTTTCAT
16965 TTTTTCAT
1 TTTTTCAT
16973 TTTTTCAT
1 TTTTTCAT
16981 TTTTT-AT
1 TTTTTCAT
** *
16988 TTTCACAA
1 TTTTTCAT
*
16996 ATTTTCATTT
1 TTTTTCA--T
17006 TTTTCTCAT
1 TTTT-TCAT
17015 TTTTTC--
1 TTTTTCAT
* *
17021 CTTTTCCT
1 TTTTTCAT
17029 TTTTT-ATT
1 TTTTTCA-T
17037 TTTTTCAT
1 TTTTTCAT
17045 TTTTT
1 TTTTT
17050 TTTCTTCTTC
Statistics
Matches: 113, Mismatches: 13, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
6 5 0.04
7 31 0.27
8 55 0.49
9 10 0.09
10 9 0.08
11 3 0.03
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTCAT
Found at i:16938 original size:16 final size:15
Alignment explanation
Indices: 16918--16990 Score: 80
Period size: 15 Copynumber: 4.9 Consensus size: 15
16908 ATTTTTCTCT
16918 ATTTTTTCATTTTTC
1 ATTTTTTCATTTTTC
16933 ATTTTTCTC-TTTCTTC
1 ATTTTT-TCATTT-TTC
* *
16949 -TTTCTTCTTTTTTC
1 ATTTTTTCATTTTTC
16963 ATTTTTTCATTTTTTC
1 ATTTTTTCA-TTTTTC
16979 ATTTTTT-ATTTT
1 ATTTTTTCATTTT
16991 CACAAATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
14 9 0.18
15 23 0.46
16 18 0.36
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (15 bp):
ATTTTTTCATTTTTC
Found at i:17007 original size:7 final size:7
Alignment explanation
Indices: 16920--16990 Score: 63
Period size: 7 Copynumber: 9.6 Consensus size: 7
16910 TTTTCTCTAT
16920 TTTTTCA
1 TTTTTCA
16927 TTTTTCA
1 TTTTTCA
*
16934 TTTTTCTC
1 TTTTTC-A
16942 TTTCTTC-
1 TTT-TTCA
*
16949 TTTCTTCT
1 TTT-TTCA
16957 TTTTTCA
1 TTTTTCA
16964 TTTTTTCA
1 -TTTTTCA
16972 TTTTTTCA
1 -TTTTTCA
*
16980 TTTTTTA
1 TTTTTCA
16987 TTTT
1 TTTT
16991 CACAAATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
7 33 0.58
8 21 0.37
9 3 0.05
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:20998 original size:64 final size:64
Alignment explanation
Indices: 20930--21085 Score: 183
Period size: 64 Copynumber: 2.4 Consensus size: 64
20920 TTGAAGGTGT
**
20930 ATCGATGCACAGGTAGTGCATCGATGCACTCTTTTAA-AATATAAACATCGAATGCA-ATTAGTG
1 ATCGATGCACAGGTAGTGCATCGATGCACTCCATTAATAATA-AAACATCGAATGCATATTA-TG
20993 C
64 C
* * * *
20994 ATCGATGCATAAGGCA-TGCATCGATGCATTCCATTAATAATAAAACATCGAATGCATTTTATGC
1 ATCGATGCA-CAGGTAGTGCATCGATGCACTCCATTAATAATAAAACATCGAATGCATATTATGC
* * *
21058 ACCAATGCACAAGTAGTGCATCGATGCA
1 ATCGATGCACAGGTAGTGCATCGATGCA
21086 TACCTTCATT
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
63 3 0.04
64 63 0.82
65 11 0.14
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (64 bp):
ATCGATGCACAGGTAGTGCATCGATGCACTCCATTAATAATAAAACATCGAATGCATATTATGC
Found at i:25664 original size:45 final size:47
Alignment explanation
Indices: 25599--25701 Score: 147
Period size: 45 Copynumber: 2.2 Consensus size: 47
25589 TGTTATTCAC
*
25599 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGC-TTGTTCG
1 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCATTATTCG
* *
25645 AAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCATTTATTCG
1 AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA-TTATTCG
25692 AAAAACGAAA
1 AAAAA-GAAA
25702 ATAAATGACT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
45 28 0.56
46 8 0.16
47 11 0.22
48 3 0.06
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (47 bp):
AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCATTATTCG
Found at i:28369 original size:31 final size:31
Alignment explanation
Indices: 28331--28396 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
28321 GTTTATGGGT
* *
28331 TGCTAGTATAGCTTTCGAAACTCACTGCTTG
1 TGCTAGTATAGCTGTCGAAACTCACTACTTG
* *
28362 TGCTAGTATTGCTGTCGAAATTCACTACTTG
1 TGCTAGTATAGCTGTCGAAACTCACTACTTG
28393 TGCT
1 TGCT
28397 TTGAATACCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (31 bp):
TGCTAGTATAGCTGTCGAAACTCACTACTTG
Found at i:29402 original size:23 final size:23
Alignment explanation
Indices: 29376--29420 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
29366 CACCACAGCT
*
29376 CGTATAACTGCACCGAAGTGCCC
1 CGTAGAACTGCACCGAAGTGCCC
* *
29399 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAACTGCACCGAAGTGCC
29421 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAACTGCACCGAAGTGCCC
Found at i:29669 original size:149 final size:149
Alignment explanation
Indices: 29399--29702 Score: 599
Period size: 149 Copynumber: 2.0 Consensus size: 149
29389 CGAAGTGCCC
29399 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
*
29464 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGGATATA
66 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
29529 CATATGTCCTAAAGAACCG
131 CATATGTCCTAAAGAACCG
29548 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
29613 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
66 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
29678 CATATGTCCTAAAGAACCG
131 CATATGTCCTAAAGAACCG
29697 CGTAGA
1 CGTAGA
29703 CCCTCTACCC
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 154 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
CATATGTCCTAAAGAACCG
Found at i:36360 original size:23 final size:23
Alignment explanation
Indices: 36334--36378 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36324 CACCACAGCT
*
36334 CGTATAACTGCACCGAAGTGCCC
1 CGTAGAACTGCACCGAAGTGCCC
* *
36357 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAACTGCACCGAAGTGCC
36379 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAACTGCACCGAAGTGCCC
Found at i:36627 original size:149 final size:149
Alignment explanation
Indices: 36357--36660 Score: 581
Period size: 149 Copynumber: 2.0 Consensus size: 149
36347 CGAAGTGCCC
*
36357 CGTAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCATAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
*
36422 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGGATATA
66 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
*
36487 TATATGTCCTAAAGAACCG
131 CATATGTCCTAAAGAACCG
36506 CGTAGAATTGCACCATAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCATAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
36571 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
66 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
36636 CATATGTCCTAAAGAACCG
131 CATATGTCCTAAAGAACCG
36655 CGTAGA
1 CGTAGA
36661 CCCTCTACCC
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 152 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (149 bp):
CGTAGAATTGCACCATAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACAGGTTCCAAAGGATATA
CATATGTCCTAAAGAACCG
Done.