genome.fa.s3174.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003174.1 Hibiscus syriacus cultivar Beakdansim tig00006677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44699

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040--2196	41	3.8	42	69	18	132	30	22	15	30	1.95
2045--2230	83	2.3	81	80	6	214	29	20	18	31	1.96
2815--2858	2	22.0	2	100	0	88	50	0	0	50	1.00
10855--10893	12	3.2	12	85	0	51	0	46	23	30	1.53
12056--12092	18	2.0	19	89	5	58	10	10	13	64	1.49
12165--12208	21	2.1	21	83	8	54	36	4	0	59	1.18
12252--12282	2	15.5	2	100	0	62	51	0	0	48	1.00
14068--14096	14	2.1	14	100	0	58	41	13	0	44	1.44
16904--16937	13	2.6	13	80	0	50	35	0	0	64	0.94
17761--17794	14	2.4	14	100	0	68	5	50	0	44	1.26
17941--18015	33	2.2	34	81	6	82	33	5	6	54	1.49
18328--18570	30	8.2	30	77	11	223	17	15	11	55	1.68
18328--18565	90	2.7	90	86	5	306	18	14	11	55	1.68
18711--18748	2	19.0	2	100	0	76	50	0	0	50	1.00
29785--29848	3	21.7	3	93	3	112	65	0	1	32	1.02
30736--30868	38	3.5	38	69	9	101	37	10	19	32	1.86
30771--30902	38	3.5	39	75	13	130	34	11	22	31	1.90
30794--30916	38	3.2	38	72	17	119	35	12	21	30	1.90
30736--30925	76	2.5	76	89	0	272	37	11	20	31	1.87
31298--31399	50	2.0	50	81	9	118	38	17	19	24	1.93
31317--32139	45	18.6	45	77	7	643	40	18	15	24	1.90
31722--31794	36	2.0	36	86	0	101	38	23	13	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31696--32009	81	3.8	82	77	10	305	41	19	15	23	1.90
31498--32143	215	3.0	213	79	10	620	41	18	15	24	1.89
31803--32054	125	2.0	126	81	6	298	41	18	15	24	1.89
31453--32139	260	2.6	262	76	11	669	41	19	15	24	1.90
33629--33655	14	1.9	14	100	0	54	11	22	7	59	1.56
34129--34156	14	2.0	14	100	0	56	28	14	0	57	1.38
38572--38624	3	18.0	3	96	3	99	67	0	0	32	0.91
39897--40050	60	2.5	60	81	7	161	37	18	4	40	1.71
40578--40612	15	2.3	15	90	5	52	37	2	0	60	1.12
43357--43394	20	1.9	20	88	0	58	21	26	10	42	1.85

Tables:   1

The End!