genome.fa.s3175.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003175.1 Hibiscus syriacus cultivar Beakdansim tig00006682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79839

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290--331	22	1.9	22	90	9	68	14	11	4	69	1.34
1140--1228	39	2.3	40	84	7	121	37	13	21	28	1.91
1122--1206	18	4.4	19	75	16	68	38	15	21	24	1.92
1140--1228	20	4.6	18	71	18	54	37	13	21	28	1.91
5185--5230	22	2.1	22	88	8	67	41	4	17	36	1.69
10921--10952	16	2.0	16	93	0	55	12	15	25	46	1.81
11547--11595	13	3.9	12	84	10	55	32	6	0	61	1.21
11563--11636	33	2.1	35	82	7	89	22	4	0	72	1.01
13912--13963	21	2.6	18	75	21	50	32	1	3	61	1.25
13668--14226	261	2.1	269	89	5	866	27	11	18	42	1.86
17756--17877	59	2.0	60	84	4	158	36	19	4	39	1.74
19576--19607	2	16.0	2	100	0	64	50	0	0	50	1.00
34042--34134	21	4.6	20	78	4	96	40	18	23	17	1.90
34042--34134	41	2.3	41	98	0	177	40	18	23	17	1.90
34061--34195	41	3.3	41	81	6	132	38	21	20	19	1.94
34165--34217	20	2.7	20	93	0	88	24	28	20	26	1.99
34729--34795	19	3.5	19	83	2	80	47	23	16	11	1.80
34791--34956	20	9.1	19	75	16	136	12	22	22	43	1.86
34844--34931	33	2.6	33	90	1	131	11	23	25	39	1.88
36957--37079	42	2.9	42	80	2	122	22	36	17	22	1.95
37013--37079	21	3.2	21	66	6	55	23	35	20	19	1.95
38438--38473	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38580--38672	20	4.7	20	94	1	161	48	19	20	11	1.80
38675--38770	33	2.9	33	90	3	149	17	20	18	42	1.89
38678--38775	19	5.7	19	66	22	72	16	21	19	42	1.89
41066--41090	12	2.1	12	100	0	50	0	28	0	72	0.86
41265--41318	24	2.2	24	86	0	72	40	20	14	24	1.90
42102--42164	33	1.9	33	90	0	99	44	19	22	14	1.86
42381--42438	20	2.9	20	94	0	98	37	22	22	17	1.93
42457--42524	19	3.8	19	83	12	92	14	20	17	47	1.83
44545--44600	20	2.9	19	86	5	85	35	23	25	16	1.94
44600--44657	14	3.9	14	72	16	53	48	22	17	12	1.80
44584--44662	32	2.4	33	95	2	142	46	21	18	12	1.82
44669--44750	18	4.6	19	79	14	104	13	20	20	45	1.85
44735--44789	20	2.8	19	83	8	65	16	23	23	36	1.94
44669--44770	33	2.8	34	76	23	102	13	22	21	42	1.88
45267--45311	18	2.5	18	88	0	72	13	15	44	26	1.83
46631--46668	20	1.9	20	88	0	58	50	21	15	13	1.78
47163--47215	20	2.7	20	93	0	88	24	18	28	28	1.98
47143--47254	20	5.5	20	77	5	82	23	17	23	35	1.95
47183--47260	41	1.9	41	83	0	102	23	16	20	39	1.92
47246--47338	20	4.5	21	77	4	91	18	24	17	39	1.91
47246--47341	41	2.3	41	94	1	138	18	23	16	40	1.91
47265--47338	20	3.7	20	80	3	94	17	22	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51131--51231	44	2.3	44	92	0	166	27	18	20	32	1.96
51238--51397	65	2.5	65	84	5	200	25	18	25	30	1.98
51238--51447	65	3.3	63	78	12	196	24	18	25	30	1.98
52432--52475	21	2.1	21	82	0	52	31	15	43	9	1.79
59817--59854	19	2.0	19	89	0	58	28	18	28	23	1.98
59882--59969	20	4.7	19	77	14	85	20	18	32	28	1.96
59918--59951	15	2.3	15	94	0	59	20	17	32	29	1.96
62889--62914	3	8.7	3	100	0	52	65	0	0	34	0.93
67930--68004	38	2.0	38	84	5	98	46	2	2	48	1.30
69934--70057	62	1.9	62	81	15	144	47	8	3	40	1.51

Tables:   1

The End!