Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003177.1 Hibiscus syriacus cultivar Beakdansim tig00006686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54149

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4137--4206
33
2.1
34
89
2
106
35
8
24
31
1.85
5215--5248
2
17.0
2
100
0
68
50
0
0
50
1.00
5503--5541
2
19.5
2
100
0
78
51
0
0
48
1.00
6141--6215
38
2.0
37
82
10
91
48
4
2
45
1.35
9073--9112
10
3.8
10
87
12
62
65
0
0
35
0.93
9069--9119
6
9.3
6
80
18
58
64
1
0
33
1.05
9069--9114
16
2.9
16
87
9
60
65
0
0
34
0.93
9069--9119
22
2.4
22
93
3
86
64
1
0
33
1.05
12409--12517
53
2.1
53
87
3
157
31
7
13
47
1.70
12585--12634
24
2.1
24
88
0
73
40
24
8
28
1.83
18703--18756
24
2.3
24
93
3
92
40
35
3
20
1.70
19162--19215
21
2.6
21
96
0
99
50
18
11
20
1.77
22507--22545
11
3.5
11
83
16
53
64
7
7
20
1.45
22511--22557
24
2.0
24
86
0
67
63
6
6
23
1.41
23672--23719
24
2.0
24
100
0
96
16
16
20
45
1.85
25399--25466
33
1.9
34
85
11
93
42
7
7
42
1.60
37991--38069
21
4.0
21
71
23
64
64
2
0
32
1.07
37991--38042
9
6.1
9
76
13
56
63
1
0
34
1.06
37988--38040
16
3.2
17
84
10
65
66
1
0
32
1.03
37994--38043
17
3.0
17
91
2
75
60
4
0
36
1.16
39015--39074
31
1.9
31
89
0
93
40
5
8
46
1.56
39619--39715
31
3.1
31
67
18
85
53
1
0
45
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39645--39745
12
8.9
12
68
23
51
56
1
0
41
1.10
39657--39715
23
2.3
27
88
11
90
55
1
0
42
1.09
39614--39756
62
2.3
66
78
15
167
54
2
0
43
1.12
40085--40142
2
29.0
2
100
0
116
50
0
0
50
1.00
44000--44030
3
10.3
3
92
0
53
0
29
0
70
0.87
45849--45911
31
2.0
31
84
0
81
26
12
9
50
1.71
47103--47154
22
2.3
23
96
3
97
38
0
17
44
1.49
48168--48221
26
2.1
26
89
0
81
24
12
27
35
1.92
50035--50080
23
2.0
24
91
4
76
17
23
13
45
1.83

Tables:   1

The End!