genome.fa.s3178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003178.1 Hibiscus syriacus cultivar Beakdansim tig00006691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95983

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6086--6141	2	29.5	2	89	10	91	51	0	0	48	1.00
12615--12648	15	2.2	16	89	5	52	64	5	0	29	1.17
12611--12692	14	5.8	14	77	11	60	63	3	1	31	1.19
12604--12690	18	4.6	18	76	13	68	64	3	1	31	1.17
13721--13780	27	2.2	27	82	5	77	60	0	3	36	1.14
14534--14691	79	2.0	81	82	5	196	24	17	23	34	1.96
14728--15418	36	20.0	36	76	14	573	40	13	19	26	1.88
14875--14980	21	5.6	21	70	24	101	39	11	20	28	1.87
15144--15213	21	3.6	21	72	21	80	38	11	21	28	1.88
15164--15418	139	1.8	138	89	2	404	39	12	18	29	1.88
15303--15443	36	3.9	35	81	11	135	37	12	19	30	1.88
16745--16971	95	2.6	87	82	13	284	32	20	18	28	1.96
16802--16984	95	1.9	95	95	0	330	30	19	18	31	1.96
20158--20207	24	2.1	24	96	0	91	28	16	26	30	1.96
21048--21090	22	2.0	21	86	4	59	65	2	13	18	1.38
21126--21230	55	1.9	55	90	3	167	64	4	0	29	1.20
21139--21237	25	3.9	25	68	17	62	63	4	1	31	1.19
21183--21250	19	3.5	19	77	2	64	66	4	0	29	1.11
22317--22376	27	2.2	27	84	0	84	61	0	1	36	1.06
23143--23192	2	25.0	2	100	0	100	50	0	0	50	1.00
30611--31006	69	5.8	68	90	1	488	23	25	20	30	1.99
30611--31006	138	2.9	137	89	1	596	23	25	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30611--31006	207	1.9	205	90	1	630	23	25	20	30	1.99
37204--37238	17	2.1	16	89	5	52	60	0	31	8	1.27
53642--53755	21	5.4	21	100	0	228	14	25	24	35	1.93
53850--53905	15	3.6	15	79	9	67	42	12	12	32	1.80
53853--53903	17	3.1	17	77	11	61	43	11	9	35	1.75
54327--54425	33	3.0	33	94	1	164	45	15	7	32	1.73
56759--56799	13	2.9	14	89	10	66	19	17	14	48	1.81
57691--57738	26	1.9	25	87	8	71	20	10	12	56	1.65
58561--58601	16	2.6	16	88	0	64	51	36	0	12	1.40
62250--62289	21	1.9	21	85	10	55	42	15	15	27	1.86
66598--66644	15	3.1	15	75	6	58	19	10	31	38	1.86
66597--66641	16	2.9	16	76	3	56	20	13	28	37	1.90
66888--66931	22	2.0	21	86	4	61	20	9	2	68	1.28
73047--73108	23	2.7	23	77	5	72	40	11	20	27	1.87
73262--73325	26	2.4	26	89	5	92	26	9	17	46	1.78
74391--74445	23	2.4	23	84	0	83	34	10	25	29	1.90
76171--76225	23	2.4	22	82	8	74	36	10	23	29	1.89
77636--77916	68	4.1	68	79	4	278	38	5	15	40	1.70
77895--77975	26	3.1	25	84	7	90	37	7	17	38	1.78
77920--78137	94	2.3	93	90	3	350	36	7	16	39	1.78
78860--78930	33	2.2	33	94	0	124	47	21	21	9	1.79
82471--82537	34	1.9	34	82	14	84	20	11	19	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83955--83998	23	2.0	22	82	13	54	40	0	2	56	1.11
84527--84572	24	1.9	24	81	0	56	36	4	8	50	1.53
87477--87514	18	2.1	18	85	9	51	36	5	10	47	1.61

Tables:   1

The End!