Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000318.1 Hibiscus syriacus cultivar Beakdansim tig00000600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79618

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25--81
29
2.0
29
92
0
96
21
29
33
15
1.94
11047--11080
16
2.1
16
88
5
50
5
17
41
35
1.74
14902--14971
3
23.7
3
91
2
115
62
1
0
35
1.04
15138--15389
105
2.4
105
85
2
335
24
19
17
39
1.92
15317--15372
16
3.3
16
68
22
51
19
23
8
48
1.77
15309--15742
225
1.9
223
89
3
667
26
22
16
35
1.94
16610--16671
17
3.4
19
85
14
71
8
12
0
79
0.94
16634--16677
9
5.3
9
76
17
51
9
11
0
79
0.93
16634--16702
15
4.4
16
82
12
81
8
13
1
76
1.07
16634--16702
31
2.2
32
84
7
88
8
13
1
76
1.07
29974--30037
3
21.7
3
90
3
103
62
1
0
35
1.05
36108--36157
3
16.7
3
100
0
100
68
0
0
32
0.90
38224--38274
26
2.0
26
100
0
102
47
3
19
29
1.68
46003--46060
30
1.9
30
96
0
107
50
5
8
36
1.56
47721--47762
2
21.0
2
100
0
84
50
0
0
50
1.00
48140--48193
23
2.2
25
80
6
67
37
1
5
55
1.34
50024--50080
5
10.8
5
94
1
51
7
38
36
17
1.77
50053--50082
6
5.2
6
96
4
53
0
33
36
30
1.58
50082--50290
6
34.8
6
98
0
319
11
16
50
22
1.76
50561--50615
22
2.5
22
75
0
56
29
9
23
38
1.85
56135--56178
5
8.8
5
92
0
52
6
40
36
15
1.74
56176--56236
6
10.2
6
96
0
86
6
16
49
27
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56511--56565
22
2.5
22
75
0
56
29
9
23
38
1.85
63585--63657
18
3.9
18
84
7
101
28
31
20
19
1.97
64268--64390
64
1.9
65
84
1
167
26
20
20
32
1.97
65973--66216
42
5.8
42
93
0
425
19
20
24
36
1.95
65973--66216
84
2.9
84
98
0
470
19
20
24
36
1.95
66167--66270
50
2.1
49
80
7
111
24
19
20
36
1.95
66847--66871
5
5.0
5
100
0
50
0
60
20
20
1.37
68597--68770
94
1.9
92
90
8
284
47
6
8
36
1.61
69573--69632
20
2.9
20
73
14
59
41
0
3
55
1.16
69913--69962
22
2.3
22
78
0
55
48
0
4
48
1.20
69973--70022
26
2.0
25
84
4
64
40
0
4
56
1.18

Tables:   1

The End!