Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003180.1 Hibiscus syriacus cultivar Beakdansim tig00006695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64678

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1084--1440
134
2.7
134
86
3
468
25
17
31
25
1.97
1726--1783
29
2.0
30
89
3
91
44
12
13
29
1.80
1662--1875
91
2.3
93
83
3
270
43
15
13
27
1.84
1872--1946
32
2.4
32
82
8
93
38
6
17
37
1.76
1834--1949
29
3.8
30
76
13
87
41
11
14
32
1.81
1917--2133
66
3.3
66
80
11
209
43
13
11
30
1.81
1957--2136
64
2.8
63
84
8
211
44
15
11
29
1.80
2049--2229
100
1.8
101
83
10
246
41
13
13
30
1.83
2201--2259
31
1.9
31
93
3
102
42
15
13
28
1.85
2296--2401
36
2.9
37
82
2
142
39
10
16
33
1.82
3823--3865
22
2.0
22
85
0
59
13
18
4
62
1.48
10335--10377
18
2.4
18
84
7
52
25
6
0
67
1.15
10335--10388
18
2.9
18
77
22
51
25
7
0
66
1.17
15250--15284
14
2.5
14
85
0
52
74
5
0
20
1.02
16777--16826
23
2.2
23
96
0
91
34
16
14
36
1.88
19177--19201
13
1.9
13
100
0
50
60
0
16
24
1.36
30222--30320
34
2.8
34
84
4
117
41
11
15
32
1.82
30788--30841
18
3.1
18
72
17
51
25
7
1
64
1.30
32151--32183
5
6.6
5
100
0
66
18
0
0
81
0.68
34028--34091
25
2.4
25
77
12
67
76
4
15
3
1.08
34022--34080
18
3.3
18
79
6
66
79
5
11
3
1.01
34683--34759
22
3.5
22
84
7
111
41
24
10
23
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35512--35645
37
3.7
35
81
7
142
26
20
13
39
1.89
35512--35649
36
3.8
36
82
6
154
26
20
13
40
1.88
35650--36606
106
9.0
106
89
0
1432
33
25
18
22
1.97
37356--37458
35
2.8
37
78
11
122
40
13
12
33
1.82
37952--37989
20
1.9
20
88
0
58
26
7
2
63
1.35
42267--42297
2
15.5
2
100
0
62
51
0
0
48
1.00
44307--44362
14
3.9
14
75
11
51
44
1
0
53
1.11
47151--47176
3
8.7
3
100
0
52
30
0
0
69
0.89
48057--48124
35
1.9
35
100
0
136
30
17
11
39
1.86
48564--48622
28
2.1
28
100
0
118
18
42
6
32
1.77
58705--58807
45
2.2
47
84
6
138
39
19
13
27
1.89
62029--62161
55
2.5
52
85
6
149
32
23
15
28
1.95
62023--62433
54
7.7
54
79
8
346
31
23
16
28
1.96
62029--62342
104
2.9
106
78
9
307
33
23
14
28
1.94
62277--62439
51
3.1
50
89
4
227
30
25
15
28
1.96
62724--62758
17
2.1
17
89
10
54
31
22
2
42
1.68
63779--63861
8
10.6
8
80
16
70
9
13
0
77
1.00
63790--63848
19
3.2
19
79
11
77
6
13
0
79
0.92
63791--63861
7
10.6
7
80
17
55
8
12
0
78
0.95
63798--63856
10
6.3
10
79
15
56
6
13
0
79
0.92
63799--63929
68
1.9
68
83
11
171
9
14
0
75
1.04

Tables:   1

The End!