Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003181.1 Hibiscus syriacus cultivar Beakdansim tig00006696_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47668

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1263--1291
14
2.1
14
100
0
58
58
6
27
6
1.50
6852--6906
20
2.8
19
76
15
67
34
27
14
23
1.94
6852--6921
19
3.6
20
81
11
83
34
25
12
27
1.92
7664--7697
12
2.8
12
90
0
50
55
29
0
14
1.40
7823--7876
24
2.2
24
93
0
90
20
18
20
40
1.91
10137--10171
6
5.8
6
86
0
52
60
20
2
17
1.49
10615--10666
25
2.1
25
96
0
95
28
7
21
42
1.80
11051--11087
18
2.1
18
89
0
56
32
5
10
51
1.60
11043--11095
24
2.2
24
86
0
70
35
3
13
47
1.61
11400--11486
39
2.2
39
91
0
138
48
18
14
18
1.82
11787--11926
66
2.2
60
87
7
190
52
17
0
30
1.50
13301--13396
21
4.6
21
74
8
79
21
16
34
27
1.95
13540--13589
4
12.5
4
82
0
64
68
2
0
30
1.01
14397--14431
16
2.2
16
100
0
70
57
17
0
25
1.40
14402--14440
16
2.4
16
91
0
60
64
17
0
17
1.30
16087--16191
20
5.2
20
76
13
108
20
17
21
40
1.91
16215--16268
20
2.7
20
75
11
65
27
14
29
27
1.95
18197--18377
60
3.0
60
79
5
197
30
20
7
40
1.81
18517--18656
60
2.3
60
78
8
151
40
3
23
32
1.72
18753--18821
30
2.3
30
82
7
79
36
5
10
47
1.61
22385--22423
20
2.0
20
94
0
69
23
15
30
30
1.95
23069--23103
15
2.3
15
85
0
52
54
25
0
20
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30995--31048
20
2.8
20
91
2
92
24
16
27
31
1.96
30950--31113
84
2.0
83
84
9
217
28
15
25
30
1.96
31075--31113
20
2.0
20
89
0
60
20
15
33
30
1.94
32514--32593
30
2.7
31
74
12
80
30
1
10
58
1.38
33464--33542
36
2.3
35
86
6
108
24
8
16
50
1.73
35736--35774
18
2.1
18
85
4
51
46
25
10
17
1.80
42772--42933
80
2.0
81
93
1
281
25
27
24
23
2.00
46086--46135
22
2.1
25
82
14
70
28
0
0
72
0.86
46087--46135
24
2.1
22
88
7
71
28
0
0
71
0.86
46209--46252
22
2.1
21
84
16
56
34
0
0
65
0.93

Tables:   1

The End!