genome.fa.s3182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003182.1 Hibiscus syriacus cultivar Beakdansim tig00006697_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46855

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2985--3016	15	2.1	15	94	0	55	25	18	9	46	1.79
10315--10350	14	2.6	14	90	0	63	80	0	19	0	0.71
11718--12020	83	3.5	82	88	5	401	26	13	21	38	1.90
11870--12043	92	1.9	92	89	2	269	28	13	22	35	1.92
12405--12509	52	2.0	52	98	0	201	37	13	17	32	1.88
12807--13575	113	6.8	113	97	0	1382	38	15	19	26	1.92
13518--13646	36	3.5	38	86	10	180	48	10	20	20	1.78
13553--13648	17	5.6	16	71	19	77	48	9	18	22	1.76
13515--13646	40	3.6	35	89	8	185	49	9	20	20	1.77
13403--13746	182	1.9	185	86	6	495	41	13	18	25	1.88
14001--14064	27	2.4	27	87	7	94	46	0	0	53	1.00
14489--14524	18	1.9	19	88	5	56	66	22	11	0	1.22
20098--20140	20	2.3	19	84	15	54	48	2	2	46	1.27
27833--27998	50	3.3	50	86	6	237	43	15	15	25	1.85
27811--27998	50	3.8	49	82	8	222	45	15	14	24	1.84
27812--27998	100	1.9	96	87	4	275	44	16	14	24	1.84
28089--28220	51	2.6	52	72	12	125	54	1	3	40	1.25
28203--28230	12	2.3	12	100	0	56	50	0	0	50	1.00
29519--29616	21	4.8	20	75	6	79	37	21	19	21	1.94
29584--29812	20	11.4	20	81	5	230	36	25	17	19	1.94
30505--30551	24	2.0	24	87	8	69	25	14	21	38	1.92
33032--33230	33	5.7	34	74	17	167	46	18	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33046--33268	53	4.2	52	95	1	376	45	17	21	14	1.85
33046--33268	19	12.7	19	76	19	234	45	17	21	14	1.85
33032--33211	86	2.1	84	86	12	242	46	18	22	13	1.83
33099--33262	33	4.8	33	74	16	163	45	17	22	14	1.84
33258--33374	53	2.2	53	95	1	209	14	22	17	45	1.85
33281--33374	19	5.2	19	81	13	126	15	21	17	45	1.85
33481--33517	14	2.6	14	91	0	65	45	21	0	32	1.52
35438--35589	19	8.6	19	75	12	121	46	23	18	11	1.81
35513--35567	14	3.7	14	75	13	56	47	23	18	10	1.80
35456--35584	31	3.8	32	82	9	134	48	22	18	10	1.79
35601--35627	14	1.9	14	100	0	54	7	14	29	48	1.71
35585--35679	33	2.9	33	89	6	147	7	15	27	49	1.71
35585--35713	19	7.3	19	77	17	134	8	15	27	48	1.74
35758--35947	93	2.1	93	95	1	346	45	18	12	23	1.83
37645--37723	19	4.0	20	80	6	106	46	17	24	11	1.81
37640--37752	19	6.1	19	73	16	94	46	18	23	11	1.82
37640--37722	40	2.1	40	86	4	114	48	16	24	10	1.78
37748--37866	21	6.3	19	77	13	95	10	22	21	45	1.82
37790--37867	41	1.9	41	97	0	147	12	25	16	44	1.83
37791--37866	21	3.7	21	83	3	109	11	25	17	46	1.82
37946--38016	33	2.2	33	94	0	124	47	16	23	11	1.79
38396--38569	20	8.6	20	85	5	217	18	18	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38439--38587	60	2.5	60	87	2	201	20	19	26	33	1.96
39266--39311	20	2.3	20	96	0	83	43	26	13	17	1.85
39887--39975	19	4.6	20	79	9	60	15	11	17	55	1.69
39894--39954	20	3.1	20	77	13	63	13	9	18	59	1.61
43591--43646	20	2.8	20	75	0	67	42	19	19	17	1.89
43597--43657	20	3.0	20	78	0	68	39	19	21	19	1.93
43689--43744	29	1.9	29	96	0	103	32	23	16	28	1.96
43984--44019	18	2.0	18	94	0	63	16	2	25	55	1.55

Tables:   1

The End!