genome.fa.s3184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003184.1 Hibiscus syriacus cultivar Beakdansim tig00006700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82920

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220--1641	86	4.9	84	74	15	308	51	6	16	25	1.69
1220--1687	44	10.8	44	74	12	310	52	6	16	24	1.67
1215--1548	130	2.6	130	80	12	343	48	6	19	25	1.73
1220--1687	87	5.4	86	74	12	278	52	6	16	24	1.67
1880--2232	177	2.0	176	93	1	600	31	13	11	43	1.80
9219--9255	4	9.2	4	93	0	65	48	24	2	24	1.64
12803--13170	20	18.5	20	84	5	449	34	26	19	20	1.96
13841--13887	24	2.0	24	87	8	69	25	14	21	38	1.92
14062--14086	12	2.1	12	100	0	50	72	0	28	0	0.86
16385--16710	19	18.4	19	79	16	380	46	18	20	14	1.83
16385--16710	71	4.6	71	84	10	440	46	18	20	14	1.83
16385--16710	52	6.2	53	84	11	347	46	18	20	14	1.83
16471--16732	33	7.5	34	78	16	170	46	17	20	15	1.84
16739--16821	20	4.6	19	81	15	113	14	24	18	43	1.87
16928--16963	14	2.6	14	86	4	56	44	22	0	33	1.53
16956--17030	12	6.2	12	68	20	57	57	17	1	24	1.48
16945--17016	38	1.9	38	94	2	128	52	16	1	29	1.52
18884--18940	14	3.7	14	77	20	60	45	22	21	10	1.82
18865--18957	33	2.8	33	95	0	168	47	21	20	10	1.80
18828--18962	19	7.6	19	76	16	128	45	23	19	11	1.82
18958--19086	19	7.3	19	73	17	116	9	17	28	44	1.79
18958--19049	33	2.8	34	91	3	143	8	18	28	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19130--19509	93	4.1	93	99	0	753	46	18	12	22	1.83
19130--19509	185	2.0	186	99	0	753	46	18	12	22	1.83
21213--21302	14	5.7	14	74	23	81	42	23	25	8	1.83
21205--21319	33	3.5	33	95	0	212	45	20	24	9	1.81
21212--21324	19	6.8	18	72	23	88	43	22	24	9	1.83
21511--21581	33	2.2	33	92	0	115	47	18	22	11	1.80
21763--21817	22	2.5	22	81	0	74	20	16	40	23	1.91
21963--22155	20	9.6	20	82	5	219	19	19	25	35	1.95
21963--22155	60	3.2	60	83	0	251	19	19	25	35	1.95
22211--22262	20	2.6	20	96	0	95	21	13	26	38	1.90
26908--26935	14	2.0	14	100	0	56	50	7	0	42	1.30
27245--27278	18	1.9	18	88	5	52	23	26	23	26	2.00
27821--28385	112	5.1	112	92	1	919	45	14	14	25	1.83
27821--28385	223	2.5	222	91	2	906	45	14	14	25	1.83
28333--28663	162	2.1	160	91	3	540	43	12	15	29	1.82
29123--29170	23	2.1	23	88	0	69	39	18	6	35	1.76
29330--29374	24	1.9	23	86	4	63	35	20	20	24	1.96
32433--32494	2	31.0	2	100	0	124	50	0	0	50	1.00
33214--33243	10	3.0	10	95	0	51	26	0	0	73	0.84
33256--33286	16	1.9	16	93	0	53	58	6	0	35	1.24
34374--34412	20	2.0	20	89	0	60	17	41	35	5	1.72
36044--36077	10	3.4	10	87	0	50	20	5	0	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45553--45577	12	2.1	12	100	0	50	84	0	16	0	0.63
45497--46707	599	2.0	599	95	0	2208	35	19	19	26	1.95
46899--47462	106	5.3	106	95	1	981	33	25	18	22	1.96
48827--48865	20	2.0	20	89	0	60	17	41	35	5	1.72
59620--59646	13	2.1	13	100	0	54	70	0	7	22	1.12
59821--59862	18	2.4	17	88	7	66	71	4	4	19	1.22
61319--61390	3	23.7	3	91	8	119	69	0	0	30	0.89
61318--61398	6	14.6	5	85	14	58	70	0	0	29	0.88
61785--61984	43	4.4	45	68	13	131	25	18	30	26	1.98
61544--61993	134	3.2	140	86	7	637	24	18	30	26	1.98
61618--62029	141	3.0	137	82	10	498	24	17	29	28	1.97
62938--62984	14	3.2	14	88	11	76	12	0	12	74	1.07
62936--62984	16	3.2	16	88	11	84	12	0	12	75	1.05
70052--70114	30	2.1	30	84	0	81	31	6	20	41	1.77
74525--74551	13	2.1	13	100	0	54	70	0	7	22	1.12
74724--74765	18	2.4	17	88	7	66	71	4	4	19	1.22
76225--76290	3	21.7	3	87	9	98	68	1	0	30	0.99
77167--77199	13	2.5	13	95	0	57	24	36	24	15	1.93
80512--80536	12	2.1	12	100	0	50	8	24	0	68	1.16

Tables:   1

The End!