Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003186.1 Hibiscus syriacus cultivar Beakdansim tig00006702_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65915

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3192--3261
29
2.4
29
92
0
113
30
22
21
25
1.99
4989--5226
119
2.0
119
99
0
469
24
22
12
40
1.89
5614--5640
9
3.0
9
100
0
54
55
0
44
0
0.99
10457--10841
215
1.8
206
84
5
527
38
7
15
39
1.75
10990--11044
24
2.3
24
90
6
85
60
3
7
29
1.41
11758--11816
28
2.1
28
87
0
82
42
6
5
45
1.52
12689--12831
46
3.1
46
97
0
268
40
18
12
28
1.87
12723--12798
25
3.2
25
61
21
63
40
17
13
28
1.87
16888--16913
10
2.6
10
100
0
52
0
26
0
73
0.84
19568--19621
28
2.0
27
88
3
81
40
3
0
55
1.17
20897--20928
17
1.9
16
93
6
55
50
0
0
50
1.00
21758--21791
12
2.8
12
95
0
59
26
5
2
64
1.30
22232--22294
29
2.2
29
85
5
83
41
6
3
49
1.44
22940--22967
14
2.0
14
100
0
56
42
0
7
50
1.30
30208--30251
20
2.2
20
88
4
63
47
6
13
31
1.69
33630--33835
40
4.8
42
75
15
181
24
18
33
23
1.97
33402--33842
134
3.3
134
86
5
466
22
19
30
26
1.98
33854--34021
28
6.0
28
86
0
192
47
14
15
22
1.82
34523--34869
106
3.3
105
88
2
509
40
12
15
31
1.84
34466--34869
106
3.8
105
85
3
494
39
11
16
32
1.84
34847--34946
36
2.9
35
80
3
103
38
11
18
33
1.85
35247--35291
16
2.8
16
93
0
81
22
0
24
53
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45413--45453
22
1.9
22
90
5
66
24
2
9
63
1.37
60005--60052
12
3.8
12
81
15
53
56
0
0
43
0.99
60193--60607
76
5.5
76
95
0
713
34
21
19
24
1.96
60610--60930
165
2.0
164
90
2
511
38
13
14
33
1.85
61444--61503
22
2.7
22
86
0
93
41
11
11
35
1.78

Tables:   1

The End!