genome.fa.s3187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003187.1 Hibiscus syriacus cultivar Beakdansim tig00006703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178661

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894--1952	23	2.6	22	84	12	66	64	3	1	30	1.20
1903--1949	23	2.0	24	95	4	87	63	4	0	31	1.13
2685--2718	16	2.1	16	89	10	52	35	2	0	61	1.11
2831--2901	33	2.1	34	86	2	99	49	0	14	36	1.43
12955--13011	19	2.8	21	84	7	73	24	35	26	14	1.93
16468--16514	24	2.0	24	91	0	76	36	4	12	46	1.62
16717--16880	60	2.7	61	96	0	294	26	16	24	32	1.96
19384--19446	31	2.0	31	81	0	72	25	20	14	39	1.90
22555--22601	2	23.5	2	95	0	85	53	0	0	46	1.00
22767--22806	14	2.9	14	88	0	62	0	52	0	47	1.00
25419--25499	29	2.8	29	94	1	135	33	14	8	43	1.76
30187--30268	29	2.8	29	94	1	137	32	14	9	42	1.79
33406--33532	60	2.1	60	88	0	182	31	20	15	32	1.94
37163--37311	75	2.0	76	97	1	282	48	11	13	26	1.76
37480--37507	14	2.0	14	100	0	56	35	7	28	28	1.84
44070--44131	31	2.0	31	83	0	79	33	25	19	20	1.96
50993--51037	22	2.0	22	100	0	90	40	22	8	28	1.84
52441--52527	45	1.9	45	90	4	140	33	11	12	42	1.79
54248--54301	22	2.3	24	81	12	67	31	1	11	55	1.45
61112--61181	12	5.8	12	75	12	63	51	18	14	15	1.77
61110--61218	24	4.5	24	80	4	112	50	16	14	18	1.78
61110--61218	48	2.3	47	84	6	130	50	16	14	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62323--62422	43	2.3	43	84	6	132	21	23	3	53	1.60
63749--63818	18	4.2	18	78	17	87	12	18	50	18	1.78
63760--63796	13	2.8	13	91	0	65	13	21	48	16	1.80
65878--65947	12	5.8	12	75	12	63	51	18	14	15	1.77
65876--65984	24	4.5	24	80	4	112	50	16	14	18	1.78
65876--65984	48	2.3	47	84	6	130	50	16	14	18	1.78
68514--68589	18	4.3	18	89	1	118	11	21	50	17	1.77
69399--69493	34	2.9	32	84	7	111	28	13	3	54	1.54
70207--70275	6	11.2	6	78	10	52	17	7	1	73	1.12
71335--71374	16	2.5	16	87	0	53	47	17	0	35	1.48
80064--80100	6	6.2	6	87	0	56	13	13	18	54	1.71
82714--82746	17	1.9	17	93	0	57	63	6	6	24	1.40
82758--82803	16	2.9	16	81	12	58	56	2	0	41	1.11
83268--83299	14	2.4	14	94	5	57	59	6	9	25	1.52
83285--83327	21	2.0	21	86	0	59	60	13	9	16	1.58
95536--95656	23	5.2	23	82	8	131	33	26	23	16	1.96
95756--95796	16	2.7	15	85	14	57	46	19	0	34	1.50
95755--95796	15	2.7	16	86	13	61	45	19	0	35	1.50
95956--95986	2	15.5	2	100	0	62	51	0	0	48	1.00
98886--98935	3	16.7	3	100	0	100	32	0	0	68	0.90
99878--99924	15	3.0	16	82	14	62	46	0	0	53	1.00
99886--99924	6	7.2	6	78	21	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99877--99915	11	3.7	11	90	10	64	43	0	0	56	0.99
99878--99929	26	2.0	26	85	7	70	50	0	0	50	1.00
102233--102372	47	3.0	47	76	4	149	30	30	12	25	1.93
102228--102370	46	3.1	46	78	3	162	30	32	12	23	1.92
103743--103774	16	2.0	16	93	0	55	40	0	6	53	1.26
104834--104903	31	2.3	31	85	7	97	41	20	12	25	1.88
108658--108700	14	3.1	14	83	6	61	41	2	0	55	1.12
108658--108698	13	3.1	13	85	3	55	41	2	0	56	1.13
110842--110894	22	2.4	22	100	0	106	43	5	3	47	1.45
111846--111913	10	7.0	10	74	11	61	19	23	29	27	1.98
111846--111915	19	3.6	19	84	5	79	18	25	28	27	1.98
111909--111949	17	2.4	17	95	0	73	17	41	24	17	1.89
111939--111968	7	4.4	7	91	8	53	16	30	30	23	1.96
111939--111968	13	2.2	14	94	5	53	16	30	30	23	1.96
119172--119246	17	4.4	17	96	0	123	17	41	24	17	1.90
121126--121150	11	2.3	11	100	0	50	56	0	8	36	1.29
123393--123443	21	2.5	20	84	9	66	35	15	23	25	1.94
123408--123469	21	3.0	21	90	0	88	32	12	24	30	1.93
125223--125277	21	2.7	20	77	8	65	21	20	20	38	1.94
125484--125552	30	2.3	30	92	0	111	36	10	8	44	1.69
125484--125572	30	3.0	30	86	0	97	35	12	7	43	1.71
125860--125921	25	2.5	25	91	0	106	43	9	1	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125885--126115	82	2.9	79	85	12	332	42	6	3	47	1.47
125792--126105	37	8.6	35	79	18	272	43	7	2	46	1.47
126090--126121	2	16.5	2	93	6	57	46	0	0	53	1.00
126156--126208	2	26.5	2	100	0	106	50	0	0	49	1.00
126607--126653	21	2.1	23	92	7	80	29	21	21	27	1.98
126962--127019	30	1.9	30	85	0	80	39	10	8	41	1.70
127059--127193	70	1.9	70	86	8	195	31	25	20	21	1.98
127061--127217	70	2.2	70	78	6	158	30	25	22	21	1.99
130118--130148	4	7.8	4	92	0	53	0	19	25	54	1.44
130367--130475	57	1.9	57	88	0	164	20	16	21	42	1.89
131122--131177	15	3.6	16	77	15	55	42	0	1	55	1.10
131107--131178	29	2.4	27	80	15	72	38	0	1	59	1.06
131320--131373	17	3.2	17	72	0	54	31	0	3	64	1.11
132889--132936	21	2.3	21	85	0	60	25	39	12	22	1.89
132940--133033	21	4.5	21	92	5	145	18	34	27	20	1.95
133541--133637	31	3.0	31	81	6	113	54	4	2	39	1.31
133930--134541	129	4.9	129	88	7	903	33	18	24	23	1.97
133935--134541	122	4.9	125	90	5	873	33	18	24	22	1.97
134612--134652	8	5.2	8	77	16	50	36	26	0	36	1.57
134610--134652	15	2.8	15	76	16	52	34	25	0	39	1.56
137558--137595	18	2.1	18	85	9	51	50	2	0	47	1.15
139048--139075	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144105--144144	2	20.0	2	100	0	80	50	0	0	50	1.00
144335--144363	2	14.5	2	100	0	58	51	0	0	48	1.00
144357--144433	40	1.9	40	82	10	95	53	2	1	42	1.23
146047--146082	17	2.1	17	100	0	72	27	13	11	47	1.77
147057--147112	22	2.5	22	97	0	103	41	16	21	21	1.90
147738--147793	22	2.8	19	89	10	78	26	32	23	17	1.97
150573--150727	74	2.1	74	82	2	186	23	17	19	39	1.92
157057--157102	18	2.6	18	82	6	58	36	19	0	43	1.51
157372--157463	23	4.0	22	85	5	85	29	23	26	20	1.99
160716--160787	17	4.2	17	82	3	74	20	11	5	62	1.48
166906--166953	23	2.2	22	81	7	53	31	8	2	58	1.39
167138--167173	16	2.4	16	86	13	51	30	2	2	63	1.22
168316--168357	20	2.1	20	95	0	75	19	23	30	26	1.98

Tables:   1

The End!