genome.fa.s3188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003188.1 Hibiscus syriacus cultivar Beakdansim tig00006705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84636

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7740--7785	22	2.1	22	100	0	92	28	17	32	21	1.96
7744--7794	22	2.3	22	89	0	75	27	21	29	21	1.99
9316--9376	21	2.9	21	85	2	86	22	31	27	18	1.97
12704--12771	16	4.2	16	67	12	50	48	4	8	38	1.54
12695--12908	30	7.5	28	73	16	108	49	3	5	41	1.43
12646--12888	85	2.9	83	81	12	268	50	3	6	39	1.46
12674--12778	55	2.0	56	81	12	132	48	3	8	39	1.52
12828--13486	2	325.5	2	65	19	221	43	5	4	47	1.45
13063--13115	17	2.9	17	83	8	52	50	3	1	43	1.30
13051--13253	110	1.8	109	81	10	252	43	4	6	44	1.51
13254--13412	77	2.1	76	85	4	221	42	8	3	45	1.49
15453--15799	131	2.6	131	79	10	359	36	8	8	46	1.64
15459--15799	134	2.6	131	80	9	313	36	8	8	46	1.65
15798--15844	20	2.3	20	80	20	53	48	4	0	46	1.21
19374--19517	72	2.0	72	87	0	207	25	20	19	35	1.96
23361--23437	22	3.5	22	78	3	84	33	15	12	37	1.86
24140--24586	73	6.1	73	96	0	795	30	19	13	36	1.90
24740--24823	3	28.3	3	73	7	73	41	1	1	55	1.15
26091--26186	11	8.5	11	69	14	61	28	3	4	64	1.27
26091--26186	23	4.2	22	70	15	70	28	3	4	64	1.27
26260--26301	14	3.0	14	79	10	50	38	4	0	57	1.20
26296--26653	136	2.7	135	83	8	437	37	8	8	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27979--28234	126	2.0	128	91	2	417	44	5	12	37	1.65
33609--33712	4	24.8	4	70	13	66	25	5	2	66	1.28
33665--33708	18	2.4	18	92	0	70	29	2	2	65	1.16
35796--35845	22	2.3	22	96	0	91	28	16	8	48	1.74
35919--36183	37	7.1	36	76	11	218	44	4	6	44	1.49
35919--36176	73	3.5	74	77	12	217	44	4	6	43	1.50
36162--36228	33	2.0	33	88	0	98	49	2	4	43	1.38
36307--36374	3	22.7	3	80	14	70	26	2	0	70	1.01
42426--43113	164	4.2	164	90	2	1064	29	24	21	24	1.99
42805--43033	83	2.9	75	77	8	206	27	25	22	24	2.00
42422--43113	323	2.1	324	89	2	1066	30	24	20	24	1.99
43685--43949	37	7.1	37	75	9	227	45	4	6	44	1.47
43928--43994	33	2.0	33	88	0	98	49	2	4	43	1.38
44073--44137	3	21.7	3	79	14	64	26	3	0	70	1.01
52701--52743	18	2.4	18	92	0	68	18	16	34	30	1.93
53037--53075	21	1.9	20	89	5	60	58	2	12	25	1.47
53646--54828	81	14.6	81	87	0	1576	34	12	21	31	1.91
55867--55916	22	2.3	22	96	0	91	24	16	24	36	1.94
65166--65317	61	2.5	61	87	0	205	30	28	14	25	1.95
66504--66956	59	7.7	57	73	13	316	30	23	10	34	1.89
66558--66931	117	3.2	116	88	3	529	31	23	10	33	1.89
66455--66891	176	2.5	175	79	9	437	31	23	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69024--69087	30	2.2	30	82	2	76	39	21	4	34	1.75
71595--71637	20	2.2	20	95	0	77	51	20	13	13	1.76
72182--72252	34	2.1	34	97	0	133	11	15	19	53	1.72
73965--74005	21	2.0	21	90	0	64	17	14	31	36	1.90
73999--74117	62	1.9	61	84	6	159	21	14	32	31	1.93
74441--74511	21	3.4	21	100	0	142	21	35	19	23	1.96
76053--76108	20	2.8	20	86	0	76	37	21	17	23	1.94
76494--76528	6	5.8	6	86	0	52	17	2	20	60	1.49
77265--77358	20	4.7	20	86	2	100	31	11	23	32	1.91
78670--78714	2	22.5	2	100	0	90	51	0	0	48	1.00
81966--82007	21	2.0	21	90	9	68	45	7	4	42	1.52

Tables:   1

The End!