genome.fa.s319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000319.1 Hibiscus syriacus cultivar Beakdansim tig00000601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80175

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1713--1746	17	2.0	17	100	0	68	17	41	23	17	1.90
1773--1797	12	2.1	12	100	0	50	40	8	36	16	1.77
1826--1910	29	2.9	28	89	3	125	12	34	30	22	1.92
1929--1987	23	2.6	23	88	0	82	11	33	27	27	1.92
1975--2040	34	1.9	34	96	0	123	13	28	34	22	1.92
2941--2977	5	7.4	5	87	0	56	75	0	5	18	0.99
2939--2977	10	3.9	10	96	0	69	71	0	7	20	1.10
11702--11749	25	1.9	25	83	8	62	54	2	4	39	1.32
14776--14823	25	1.9	25	86	0	69	50	4	2	43	1.33
22225--22266	2	21.5	2	95	4	77	47	0	0	52	1.00
28970--29014	18	2.6	18	86	6	58	73	0	0	26	0.84
37682--37731	21	2.4	21	86	0	73	16	12	8	64	1.49
40433--40464	3	10.7	3	100	0	64	68	0	0	31	0.90
40994--41091	21	4.7	21	75	15	87	38	21	18	21	1.93
41058--41251	20	9.7	20	84	2	210	35	25	20	19	1.95
41632--41702	33	2.2	33	89	0	106	11	23	16	47	1.79
41775--41891	41	3.1	38	79	14	136	45	17	25	11	1.82
41782--41857	21	3.7	21	85	3	109	44	18	25	11	1.83
41842--41898	14	3.7	14	75	20	60	43	22	24	8	1.81
41834--41914	33	2.5	33	93	0	135	45	23	22	8	1.79
41910--42007	19	5.7	19	68	22	72	10	24	23	41	1.85
41932--42021	14	5.7	14	74	23	81	8	25	24	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41915--42029	33	3.5	33	95	0	203	9	24	21	44	1.82
42814--42913	19	5.5	19	83	12	138	46	17	22	15	1.84
42814--42930	53	2.2	53	93	1	200	44	17	23	14	1.85
42920--43068	19	8.6	19	73	21	139	15	22	18	43	1.87
42920--43036	52	2.2	52	95	0	207	16	21	17	44	1.87
42977--43068	33	2.8	33	98	1	175	13	23	18	44	1.85
42996--43050	14	3.6	14	73	21	56	10	23	20	45	1.82
43127--43224	19	5.4	19	84	13	143	45	17	22	14	1.84
43127--43243	53	2.2	53	98	1	227	44	17	23	13	1.85
45553--45577	12	2.1	12	100	0	50	0	28	0	72	0.86
45751--45797	24	2.0	24	87	8	69	38	21	14	25	1.92
46477--46726	20	12.5	20	84	3	261	19	18	24	37	1.94
46713--46795	21	4.0	21	73	6	78	25	16	24	33	1.96
46693--46791	42	2.4	43	77	11	100	21	18	23	37	1.94
51522--51570	22	2.2	23	85	3	64	22	2	8	67	1.28
57414--57595	60	3.0	60	80	6	199	41	4	21	32	1.73
60413--60466	4	13.5	4	100	0	108	25	24	0	50	1.50
64465--64606	54	2.6	54	90	0	230	23	25	23	27	2.00
65755--65841	45	1.9	45	86	4	122	43	14	9	32	1.77
73174--73202	2	14.5	2	100	0	58	51	0	0	48	1.00
73259--73555	85	3.5	85	91	2	465	31	17	20	29	1.96
75093--75122	7	4.3	7	95	0	51	50	13	10	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75219--75266	17	2.8	18	87	9	73	47	12	12	27	1.77
75219--75310	18	5.2	17	81	3	85	45	10	10	32	1.74

Tables:   1

The End!