genome.fa.s3190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003190.1 Hibiscus syriacus cultivar Beakdansim tig00006707_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51374

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1500--1544	18	2.5	18	92	0	72	28	4	11	55	1.54
1661--3263	192	8.5	193	90	7	2403	35	15	16	33	1.90
2551--2590	21	1.9	21	85	10	55	40	20	15	25	1.90
1661--3262	385	4.2	381	90	7	2445	35	15	16	33	1.90
5081--5133	23	2.3	23	90	0	79	37	5	15	41	1.70
5555--5591	18	2.1	18	89	0	56	32	5	10	51	1.60
5547--5593	24	2.0	24	86	0	67	34	4	14	46	1.64
5847--5931	38	2.2	39	87	6	138	48	20	12	18	1.81
6346--6407	21	2.8	23	82	7	83	35	4	22	37	1.76
6346--6418	23	3.3	23	77	12	80	35	4	21	38	1.73
6411--6456	22	2.0	23	87	4	67	26	10	8	54	1.64
6764--6830	21	3.3	21	79	8	75	31	4	23	40	1.75
6140--7161	414	2.5	420	90	8	1664	39	7	12	39	1.73
9530--9602	38	1.9	38	91	5	121	43	10	6	38	1.67
15647--16091	229	2.0	223	92	2	746	45	7	7	39	1.61
16157--16202	20	2.3	19	89	10	74	54	10	17	17	1.70
16323--16369	20	2.4	19	82	10	67	53	10	17	19	1.72
16332--16374	20	2.3	19	88	11	63	51	11	16	20	1.75
18688--18752	33	2.0	33	90	3	105	29	0	47	23	1.52
20544--20592	19	2.6	19	93	0	80	30	2	10	57	1.43
20711--22071	199	6.9	199	97	1	2580	36	15	16	31	1.90
23532--23600	3	23.0	3	78	0	66	36	7	33	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24367--25483	198	5.6	199	98	0	2156	35	15	16	31	1.90
26945--26997	12	4.4	12	92	0	70	35	7	33	22	1.83
26957--27010	3	18.0	3	84	0	72	37	3	33	25	1.74
26942--27010	18	4.0	18	79	11	72	37	5	33	23	1.79
26953--27010	12	4.8	12	93	0	80	36	5	32	25	1.78
27814--28933	198	5.6	199	98	0	2147	36	15	16	32	1.90
30397--30449	12	4.4	12	92	0	70	35	7	33	22	1.83
30409--30462	3	18.0	3	84	0	72	37	3	33	25	1.74
30394--30462	18	4.0	18	79	11	72	37	5	33	23	1.79
30405--30462	12	4.8	12	93	0	80	36	5	32	25	1.78
31266--32382	199	5.6	198	98	0	2123	36	15	16	32	1.90
33846--33898	12	4.4	12	92	0	70	35	7	33	22	1.83
33858--33911	3	18.0	3	84	0	72	37	3	33	25	1.74
33843--33911	18	4.0	18	79	11	72	37	5	33	23	1.79
33854--33911	12	4.8	12	93	0	80	36	5	32	25	1.78
35359--35859	183	2.7	183	96	0	921	34	14	16	33	1.90
37717--37779	23	2.7	23	87	0	90	34	6	19	39	1.77
37717--37789	23	3.2	23	84	3	85	32	5	20	41	1.75
38416--38452	18	2.1	18	89	0	56	32	5	10	51	1.60
38408--38454	24	2.0	24	86	0	67	34	4	14	46	1.64
38710--38796	39	2.2	39	95	0	156	48	20	13	17	1.81
39188--39263	23	3.5	22	78	15	68	39	5	19	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39200--39263	23	2.8	23	87	0	92	37	4	20	37	1.74
39200--39272	23	3.2	23	82	7	85	35	4	20	39	1.72
39315--40312	330	3.0	333	97	1	1905	42	8	11	38	1.70
44705--44749	3	15.3	3	81	4	56	0	28	0	71	0.87
44705--44742	20	1.9	20	94	0	67	0	31	0	68	0.90
45476--45513	17	2.2	17	90	9	60	39	0	13	47	1.42

Tables:   1

The End!