genome.fa.s3191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003191.1 Hibiscus syriacus cultivar Beakdansim tig00006715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77776

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3486--3681	96	2.0	96	99	0	383	42	15	7	34	1.75
3611--3727	55	2.1	55	95	0	207	36	16	11	35	1.84
4140--4279	60	2.3	60	95	0	244	37	17	10	35	1.83
6248--6316	29	2.4	30	76	7	72	44	0	1	53	1.09
9096--9658	4	140.5	4	85	7	637	26	1	22	50	1.57
8983--9429	227	2.0	225	98	0	858	29	3	16	50	1.60
22244--22572	154	2.1	157	82	7	411	50	6	14	28	1.68
24304--24357	21	2.6	21	96	0	99	42	9	14	33	1.78
24848--24905	20	2.6	22	86	10	75	31	18	22	27	1.97
25630--25671	12	3.3	12	79	20	50	45	0	19	35	1.50
25739--25832	32	3.0	32	80	7	111	31	17	19	31	1.94
26726--26900	43	4.1	43	78	2	174	32	21	21	24	1.98
26743--26900	42	3.7	42	80	5	174	31	21	20	25	1.98
27765--27821	27	2.0	28	93	6	98	40	22	14	22	1.90
31769--31803	16	2.1	18	89	10	56	65	0	8	25	1.21
31918--32006	30	2.9	30	81	8	90	60	5	4	29	1.39
31947--32009	32	2.0	29	82	11	72	58	4	7	28	1.47
32373--32474	34	2.9	36	88	7	163	28	13	13	44	1.82
33022--33958	105	9.0	105	93	1	1488	22	17	26	33	1.96
34601--34758	68	2.4	65	84	4	199	35	9	22	32	1.86
34601--34995	65	5.8	65	74	11	249	38	11	20	29	1.87
34734--35014	36	8.0	35	76	12	245	40	12	19	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34682--34995	138	2.3	137	83	1	405	39	12	19	28	1.87
35945--35993	22	2.2	22	92	0	80	28	14	24	32	1.94
35957--36000	22	2.0	22	86	0	61	31	13	22	31	1.93
36629--36715	23	3.8	22	75	15	72	2	11	9	77	1.09
36643--36720	15	5.1	16	71	22	62	1	12	8	76	1.06
39896--39930	16	2.1	18	89	10	56	65	0	8	25	1.21
39908--39950	22	2.0	20	86	8	59	67	0	6	25	1.15
39935--39979	20	2.4	19	85	7	56	64	2	8	24	1.34
39942--39979	20	1.9	20	88	0	58	63	2	7	26	1.35
40511--40612	34	2.9	36	86	7	154	27	13	13	45	1.82
43720--43778	31	2.0	29	90	6	91	27	16	8	47	1.76
46214--46273	29	2.0	31	90	6	97	36	6	15	41	1.73
46272--46313	21	2.0	21	95	0	75	23	21	28	26	1.99
46343--46382	20	1.9	22	90	10	66	37	40	10	12	1.77
46596--46665	34	2.1	32	89	5	104	31	15	31	21	1.95
47686--47744	28	2.1	27	81	9	66	50	1	0	47	1.11
51265--51331	20	3.2	21	69	23	61	37	13	7	41	1.73
57342--57536	95	2.1	93	83	11	236	27	15	21	34	1.94
58502--58547	20	2.3	20	96	0	83	13	15	34	36	1.86
61097--61135	7	5.7	7	96	3	71	56	0	15	28	1.40
65643--65764	39	3.1	39	96	0	217	27	29	28	14	1.95
68047--68355	165	1.9	163	87	4	460	25	16	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71803--71903	51	2.0	51	100	0	202	32	13	13	39	1.85
72977--73033	28	2.0	28	96	0	105	29	10	5	54	1.56
75543--75596	21	2.5	23	77	20	62	33	12	12	40	1.82

Tables:   1

The End!