genome.fa.s3192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003192.1 Hibiscus syriacus cultivar Beakdansim tig00006716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78206

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15521--15578	26	2.1	28	84	15	77	22	13	17	46	1.83
18433--18480	19	2.5	18	80	12	60	16	16	8	58	1.61
20573--20614	17	2.4	18	84	15	61	71	4	0	23	1.05
20573--20614	12	3.6	11	84	9	57	71	4	0	23	1.05
22338--22830	54	9.1	54	81	3	546	34	20	17	26	1.95
22338--22781	215	2.1	216	81	3	529	35	21	16	26	1.95
22338--22830	269	1.8	267	83	4	650	34	20	17	26	1.95
28982--29189	54	3.9	54	76	2	213	34	22	18	24	1.96
29720--29859	70	2.0	70	97	0	262	27	12	20	39	1.88
30971--31035	22	3.2	19	73	14	58	32	13	24	29	1.94
31374--31592	55	4.0	55	92	0	348	35	10	18	35	1.86
31850--32310	68	6.8	68	89	1	633	30	14	24	30	1.95
32350--32524	46	3.8	45	93	1	296	46	7	25	20	1.76
34563--34770	54	3.9	54	76	2	213	34	22	18	24	1.96
35301--35440	70	2.0	70	97	0	262	27	12	20	39	1.88
36551--36615	22	3.2	19	73	14	58	32	13	24	29	1.94
36954--37172	55	4.0	55	92	0	357	35	10	18	35	1.85
37431--37891	68	6.8	68	89	1	624	29	14	24	30	1.95
37931--38105	46	3.8	45	93	1	296	46	7	25	20	1.76
40142--40349	54	3.9	54	78	2	222	34	22	17	25	1.96
40879--41019	71	2.0	70	95	1	255	27	12	20	39	1.88
41765--42225	68	6.8	68	90	1	651	29	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42265--42439	46	3.8	45	92	1	287	46	7	24	21	1.76
45082--45261	55	3.2	55	90	1	261	36	10	19	33	1.86
45082--45295	110	1.9	111	81	7	256	37	9	19	32	1.85
45460--46206	68	11.0	68	87	0	992	31	14	24	29	1.94
46237--46452	46	4.8	45	84	5	258	47	7	23	21	1.76
46237--46451	91	2.4	90	84	3	270	47	7	22	21	1.76
46237--46456	45	4.9	44	83	6	244	47	8	22	21	1.77
49256--49480	45	5.0	45	90	2	321	32	22	7	37	1.82
49585--49745	40	4.1	40	92	0	252	34	24	15	25	1.95
55595--55641	24	2.0	25	83	8	62	59	4	14	21	1.52
60388--60563	44	4.0	44	86	5	250	40	12	21	25	1.88
64116--64179	30	2.1	31	82	8	78	6	15	7	70	1.31
67492--67541	24	2.1	24	96	0	91	54	22	8	16	1.68
74192--74391	105	1.9	105	83	2	258	28	28	16	27	1.97

Tables:   1

The End!