genome.fa.s3193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003193.1 Hibiscus syriacus cultivar Beakdansim tig00006718_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61676

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2419--2472	25	2.3	25	87	9	78	31	11	3	53	1.53
3321--3413	21	4.5	21	78	4	100	39	18	24	17	1.91
3321--3413	41	2.3	41	100	0	186	39	18	24	17	1.91
3340--3474	41	3.3	41	82	6	132	38	20	21	19	1.94
3402--3496	20	4.7	20	80	2	91	34	24	17	23	1.96
3684--3727	22	2.0	22	95	0	79	20	45	15	18	1.85
3990--4027	20	1.9	20	88	0	58	13	15	21	50	1.78
5343--5387	18	2.5	18	88	0	72	26	44	15	13	1.83
5859--5925	20	3.4	20	81	2	73	38	23	22	14	1.92
5914--5971	14	3.9	14	79	16	71	48	24	17	10	1.78
5898--5988	32	2.8	33	94	3	166	47	21	18	12	1.81
6000--6122	20	6.7	19	76	10	96	13	20	23	42	1.88
8078--8145	19	3.8	19	85	14	101	47	17	22	13	1.82
8164--8221	20	2.9	20	92	0	89	17	20	22	39	1.92
9279--9332	24	2.2	24	86	0	72	24	16	18	40	1.90
9507--9531	12	2.1	12	100	0	50	72	0	28	0	0.86
11821--11914	33	2.8	33	96	0	170	44	19	23	12	1.85
11821--11918	19	5.7	19	69	22	81	44	19	23	12	1.84
11914--11956	20	2.2	20	87	4	61	16	18	23	41	1.89
11942--11975	14	2.4	14	85	0	50	8	23	20	47	1.78
12097--12133	14	2.6	14	91	0	65	45	24	0	29	1.53
13491--13557	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13491--13613	42	2.9	41	80	7	113	22	17	36	22	1.95
15638--15736	33	3.0	33	87	1	135	39	25	23	12	1.89
15613--15797	19	10.1	19	76	14	156	43	21	22	12	1.86
15712--15797	39	2.2	38	93	2	145	46	22	20	10	1.81
15793--15859	19	3.5	19	83	2	80	10	14	25	49	1.76
16372--16423	20	2.6	20	90	0	77	25	17	28	28	1.97
16434--16526	20	4.6	20	78	4	96	17	24	18	39	1.91
16416--16526	41	2.7	41	94	4	188	17	22	18	42	1.89
17702--17754	14	3.7	14	80	5	61	22	0	32	45	1.53
28813--28922	28	3.9	28	73	15	102	31	17	10	40	1.84
29433--29488	15	3.6	15	71	17	51	41	12	10	35	1.78
29436--29486	17	3.1	17	72	11	52	41	11	7	39	1.71
29530--29638	33	3.4	33	89	3	161	45	13	8	32	1.73
29627--29668	21	2.0	21	90	0	66	50	7	11	30	1.66
32001--32035	13	2.6	14	86	4	54	57	11	11	20	1.64
32002--32061	13	3.9	14	71	24	50	48	16	15	20	1.81
33311--33404	28	3.3	27	75	15	82	41	9	8	40	1.68
37832--37876	16	2.8	16	100	0	90	55	24	13	6	1.62
38952--38993	14	3.0	14	89	0	66	54	21	14	9	1.68
40557--40634	32	2.4	32	97	0	147	37	5	25	32	1.78
48631--49607	98	10.0	98	91	1	1545	45	14	21	18	1.85
50754--50833	2	39.5	2	97	2	151	48	1	0	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58603--58629	13	2.1	13	100	0	54	51	0	0	48	1.00
59059--59114	13	4.6	13	69	24	50	39	8	17	33	1.81
59043--59115	35	2.1	35	97	0	137	38	8	19	34	1.81
59084--59146	29	2.1	31	82	5	76	36	12	14	36	1.84
61114--61143	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!