Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003194.1 Hibiscus syriacus cultivar Beakdansim tig00006723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105788

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
656--712
30
1.9
30
96
3
107
31
5
17
45
1.71
892--966
20
3.7
21
89
3
109
20
30
20
29
1.97
1729--1761
2
16.5
2
93
0
57
48
0
3
48
1.17
3907--3936
2
15.0
2
100
0
60
50
0
0
50
1.00
10136--10185
16
3.2
16
77
13
59
64
6
4
26
1.35
10283--10356
31
2.4
31
80
6
80
40
8
8
43
1.64
18325--18363
20
1.9
20
89
5
60
17
38
30
12
1.88
20701--20804
22
4.7
22
80
9
88
37
24
16
22
1.93
21054--21106
21
2.7
21
88
8
76
26
20
20
32
1.98
22798--22825
14
2.0
14
100
0
56
57
0
0
42
0.99
23198--23224
13
2.1
13
100
0
54
7
7
7
77
1.12
23218--23264
23
2.0
23
84
8
60
21
2
6
70
1.20
28104--28138
6
5.8
6
93
0
61
20
45
0
34
1.51
28465--28733
135
2.0
135
91
0
439
31
17
20
29
1.96
40706--40748
20
2.1
21
87
8
63
13
16
0
69
1.19
42383--42410
2
14.0
2
100
0
56
50
0
0
50
1.00
49295--49356
32
1.9
32
93
0
106
45
9
1
43
1.46
59448--59498
18
2.8
18
87
0
75
21
19
31
27
1.97
82054--82104
24
2.1
24
100
0
102
33
25
15
25
1.95
83185--83240
28
1.9
30
89
7
80
42
0
5
51
1.24
83386--83446
28
2.2
27
82
2
68
49
11
3
36
1.55
84929--84966
17
2.3
17
90
4
60
47
5
2
44
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85105--85181
29
2.6
29
82
10
102
35
9
10
45
1.70

Tables:   1

The End!