Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003195.1 Hibiscus syriacus cultivar Beakdansim tig00006724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79225

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4095--4201
56
1.9
56
84
3
144
49
27
13
10
1.73
4504--4543
21
1.9
21
85
10
55
35
7
32
25
1.84
10277--10312
17
2.2
17
95
5
65
52
0
0
47
1.00
11873--11926
14
3.7
14
76
13
56
14
12
16
55
1.69
11961--11993
16
2.1
16
94
0
57
6
15
24
54
1.63
12455--12486
15
2.1
16
94
5
57
53
3
0
43
1.16
26184--26247
24
2.7
24
72
0
65
62
18
7
10
1.51
29339--29444
45
2.2
48
86
8
164
30
9
20
39
1.84
31862--31894
16
1.9
18
88
11
52
27
12
6
54
1.60
39089--39165
9
8.3
9
71
15
50
75
1
16
6
1.08
39117--39201
7
13.8
6
72
19
52
80
1
11
7
0.97
39128--39187
8
7.9
8
77
17
65
80
0
11
8
0.92
39080--39185
37
2.7
37
81
14
117
75
0
16
7
1.07
39144--39201
30
1.9
31
92
3
100
81
0
10
8
0.89
39130--39201
30
2.3
32
83
11
96
80
0
11
8
0.90
40473--40545
37
2.0
37
97
0
137
36
19
20
23
1.95
40562--41042
55
8.7
55
90
2
684
26
17
24
30
1.97
44137--44682
67
8.1
67
89
0
788
37
20
21
20
1.95
54920--54949
2
15.0
2
100
0
60
50
0
0
50
1.00
58950--59013
23
2.8
23
82
0
83
20
26
25
28
1.99
62059--62147
18
4.9
18
87
0
124
22
15
32
29
1.95
62059--62145
36
2.4
36
92
0
138
21
14
33
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65239--65281
18
2.5
17
77
7
50
72
4
4
18
1.20
68264--68316
18
2.9
18
97
0
97
18
22
33
24
1.97
70266--70338
23
3.2
23
92
0
119
38
21
5
34
1.77
71797--71863
30
2.2
31
83
2
82
35
16
14
32
1.90
72650--72694
7
6.6
7
78
21
51
44
24
0
31
1.54
72646--72682
19
1.9
19
100
0
74
48
21
0
29
1.50
73114--73160
21
2.2
21
84
0
58
38
4
6
51
1.47
78050--78099
2
25.0
2
100
0
100
50
0
0
50
1.00
78136--78221
43
2.0
43
97
0
163
41
18
8
31
1.80
78632--78668
19
1.9
19
100
0
74
27
29
5
37
1.79
78682--78718
18
2.0
19
89
5
58
37
29
5
27
1.79

Tables:   1

The End!