Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003196.1 Hibiscus syriacus cultivar Beakdansim tig00006725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143397

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9989--10027
20
2.0
20
94
0
69
41
28
7
23
1.82
12330--12377
19
2.6
17
77
22
53
58
2
0
39
1.10
14354--14387
17
2.1
17
88
5
52
58
0
0
41
0.98
18767--19138
73
5.1
72
91
1
537
24
16
25
33
1.96
19173--19479
92
3.3
93
82
2
332
26
18
20
34
1.96
24435--24971
135
4.0
135
91
0
799
35
24
21
18
1.96
24816--25277
153
3.0
152
80
2
451
34
24
24
16
1.96
25122--25388
135
2.0
135
83
1
338
32
25
24
17
1.97
26611--26708
45
2.2
45
88
0
142
41
17
6
34
1.74
28870--28909
18
2.3
19
83
16
59
57
0
15
27
1.38
32306--32331
10
2.6
10
100
0
52
7
0
0
92
0.39
32828--32864
18
2.1
18
94
0
65
18
51
5
24
1.67
33625--33657
15
2.2
15
94
0
57
51
0
42
6
1.26
33911--34087
88
2.0
88
97
0
336
44
14
18
23
1.85
36794--36824
8
3.8
8
91
8
53
83
0
0
16
0.64
39313--39445
61
2.2
61
83
4
162
33
12
15
38
1.85
41698--41722
9
2.8
9
100
0
50
12
68
20
0
1.21
48010--48108
23
4.3
23
75
7
92
11
9
18
61
1.54
48065--48095
14
2.2
14
94
0
53
3
12
25
58
1.50
48391--48485
2
48.0
2
94
2
156
51
0
1
47
1.07
53798--53831
14
2.4
14
86
13
52
70
0
0
29
0.87
61732--61876
65
2.2
65
87
6
206
28
24
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61848--61896
19
2.6
19
84
9
57
24
28
20
26
1.99
69206--69249
21
2.1
21
86
0
61
9
40
15
34
1.79
70370--70527
65
2.5
64
85
5
203
29
23
18
28
1.98
71251--71293
21
2.0
21
81
0
50
30
25
25
18
1.98
78003--78045
21
2.0
21
81
0
50
30
25
25
18
1.98
78576--78644
25
2.8
25
95
0
120
18
26
26
28
1.98
78759--78803
23
2.0
23
86
0
63
20
26
26
26
1.99
80082--80148
30
2.4
28
82
9
82
68
1
4
25
1.17
80642--80671
2
15.0
2
100
0
60
50
0
0
50
1.00
85926--85989
31
2.0
31
93
3
110
62
6
3
28
1.34
87937--87980
22
2.0
22
81
4
52
43
0
6
50
1.29
89102--89149
21
2.3
21
96
0
87
58
2
4
35
1.29
90638--90667
15
2.0
15
100
0
60
60
6
20
13
1.55
100259--100361
31
3.4
30
75
12
95
39
13
16
30
1.87
101828--101855
14
2.0
14
100
0
56
28
0
28
42
1.56
110560--110616
27
2.1
27
100
0
114
35
21
15
28
1.94
116449--116474
2
13.0
2
100
0
52
50
0
0
50
1.00
128785--128836
27
2.0
25
82
17
61
51
1
7
38
1.42
130026--130089
21
3.1
21
88
2
94
57
1
1
39
1.17
131503--131527
3
8.3
3
100
0
50
0
0
32
68
0.90
131965--132001
16
2.4
16
90
4
58
29
16
8
45
1.76
135176--135335
84
2.0
80
92
7
268
26
21
26
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
140741--140824
19
4.2
19
82
11
105
34
4
29
30
1.78
140736--140815
42
1.9
41
89
2
124
31
5
30
33
1.79
140859--140961
55
2.0
51
88
11
156
36
10
25
27
1.89
141178--141249
29
2.5
29
83
0
108
29
19
25
26
1.99
142492--142524
2
17.0
2
93
6
59
51
0
0
48
1.00

Tables:   1

The End!