genome.fa.s3199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003199.1 Hibiscus syriacus cultivar Beakdansim tig00006733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54971

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463--1509	20	2.4	19	82	10	67	19	17	10	53	1.72
1641--1700	20	3.1	19	79	13	68	20	15	11	53	1.72
1430--1883	178	2.6	180	88	4	656	27	16	13	41	1.87
3064--3141	36	2.1	37	81	11	90	20	5	1	73	1.10
3086--3163	32	2.5	31	83	8	97	17	6	0	75	1.00
3847--3903	17	3.4	17	97	0	105	22	15	14	47	1.82
3838--3903	34	1.9	35	90	3	107	21	15	13	50	1.78
7102--7285	64	2.9	63	83	3	208	26	17	20	35	1.95
7102--7327	64	3.5	64	79	7	192	27	19	19	33	1.96
16976--17015	21	1.9	21	89	0	62	10	25	40	25	1.86
16996--17058	20	2.9	21	79	9	65	15	25	34	23	1.95
20866--20905	21	1.9	21	85	10	55	35	10	2	52	1.48
23172--23217	12	3.8	12	94	0	74	39	26	4	30	1.75
23528--23711	64	2.9	63	86	3	244	25	18	20	35	1.95
23528--23736	64	3.3	64	85	4	217	26	18	20	33	1.96
25786--26127	94	3.4	100	80	8	358	37	24	16	21	1.94
26385--26605	111	2.0	111	89	1	336	29	24	20	24	1.99
26675--26733	29	2.0	30	81	15	70	35	16	10	37	1.83
26793--26857	21	3.4	20	68	24	59	26	21	10	41	1.86
26727--26876	36	4.1	36	86	1	201	25	20	14	39	1.91
27761--27816	20	2.8	20	97	0	103	23	21	16	39	1.92
28855--28900	21	2.2	21	100	0	92	32	17	19	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28968--29091	20	6.0	21	71	11	87	36	12	24	27	1.91
28966--29086	41	3.0	41	93	1	199	37	12	23	27	1.90
30085--30121	19	1.9	19	88	0	56	18	5	5	70	1.27
30111--30171	23	2.7	21	79	18	61	18	9	1	70	1.23
36389--36551	81	2.0	81	100	0	326	20	25	8	45	1.79
44080--44337	85	3.0	85	78	2	277	34	18	14	31	1.92
44607--44631	11	2.3	11	100	0	50	40	16	16	28	1.89
48127--48155	3	9.7	3	100	0	58	68	0	31	0	0.89
49749--49958	65	3.3	63	78	11	203	30	24	19	26	1.98

Tables:   1

The End!