genome.fa.s32.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000032.1 Hibiscus syriacus cultivar Beakdansim tig00000053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55575

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2325--2420	34	2.8	34	91	0	156	43	3	18	34	1.66
2596--2664	34	2.0	34	94	0	120	47	4	13	34	1.62
2838--2906	34	2.0	34	97	0	129	46	4	14	34	1.64
2359--3075	242	3.0	241	94	1	1266	35	12	16	34	1.87
2903--3281	196	1.9	194	86	3	528	32	15	16	36	1.89
8462--8633	89	1.9	89	97	0	326	30	23	12	32	1.92
10326--10359	16	2.1	16	94	0	59	44	5	26	23	1.76
10871--10956	27	3.1	29	79	9	92	45	24	8	22	1.79
10953--11052	30	3.3	30	91	4	148	37	28	11	24	1.89
11822--12220	99	3.9	100	79	11	410	19	9	15	55	1.67
12029--12220	100	1.9	100	88	4	287	17	10	15	56	1.66
20948--20995	21	2.3	21	86	13	64	66	4	0	29	1.10
21897--22054	21	7.8	20	72	7	86	38	25	17	18	1.92
22021--22214	20	9.7	20	84	2	210	35	25	20	19	1.95
22593--22663	33	2.2	33	89	0	106	11	23	16	47	1.79
22736--22852	41	3.1	38	79	14	136	45	17	25	11	1.82
22743--22818	21	3.7	21	85	3	109	44	18	25	11	1.83
22803--22859	14	3.7	14	75	20	60	43	22	24	8	1.81
22795--22875	33	2.5	33	93	0	135	45	23	22	8	1.79
22871--22968	19	5.7	19	68	22	72	10	24	23	41	1.85
22893--22982	14	5.7	14	74	23	81	8	25	24	41	1.84
22876--22990	33	3.5	33	95	0	203	9	24	21	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24688--25160	93	5.1	93	98	0	921	22	12	19	45	1.83
24688--25160	185	2.5	186	98	0	921	22	12	19	45	1.83
25204--25332	19	7.3	19	75	17	116	46	27	17	8	1.77
25240--25332	33	2.8	32	88	4	141	47	26	18	7	1.75
25204--25332	52	2.5	52	73	14	131	46	27	17	8	1.77
26960--27059	19	5.5	19	84	12	147	45	17	23	15	1.85
26960--27073	53	2.2	53	95	1	203	43	16	24	14	1.86
27075--27214	19	8.1	19	72	22	130	15	22	17	45	1.85
27066--27182	52	2.2	52	93	0	198	16	20	17	45	1.86
27123--27214	33	2.8	33	98	1	175	13	23	18	44	1.85
27142--27196	14	3.6	14	73	21	56	10	23	20	45	1.82
27273--27370	19	5.4	19	84	13	143	45	17	22	14	1.84
27273--27389	53	2.2	53	98	1	227	44	17	23	13	1.85
27379--27546	19	9.6	19	76	18	186	14	23	17	44	1.86
27385--27546	33	4.7	33	90	8	261	13	23	17	45	1.84
27379--27546	71	2.4	68	92	5	268	14	23	17	44	1.86
27474--27528	14	3.6	14	73	21	56	10	23	20	45	1.82
26979--27737	313	2.4	313	90	8	1169	28	18	20	32	1.96
27605--27683	19	4.4	19	80	16	105	45	17	22	13	1.84
28368--28617	20	12.5	20	84	3	261	19	18	24	37	1.94
28584--28660	21	3.8	20	79	5	82	16	19	22	41	1.90
28565--28661	42	2.4	39	86	6	122	15	18	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32841--32900	31	1.9	32	82	3	77	48	25	10	16	1.77
39833--39903	35	2.0	35	86	5	99	12	30	4	52	1.58

Tables:   1

The End!