genome.fa.s3200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003200.1 Hibiscus syriacus cultivar Beakdansim tig00006734_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159614

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1269--1307	19	2.1	19	95	0	69	20	7	25	46	1.77
9727--9753	13	2.1	13	100	0	54	44	14	0	40	1.46
15090--15126	15	2.5	15	95	0	65	18	2	40	37	1.65
21023--21073	22	2.3	22	86	6	68	54	1	0	43	1.11
21885--21912	2	14.0	2	100	0	56	50	0	0	50	1.00
23462--23496	16	2.2	16	89	0	52	8	40	40	11	1.72
23471--23496	8	3.2	8	100	0	52	11	38	38	11	1.78
23497--25574	4	522.2	4	91	1	2702	22	4	26	45	1.71
27271--27428	60	2.6	59	79	5	147	32	26	6	34	1.82
27557--27694	60	2.3	59	80	6	145	43	5	19	31	1.75
29782--29806	3	8.3	3	100	0	50	0	36	0	64	0.94
30263--30773	166	3.1	166	91	1	787	25	17	22	33	1.96
30293--30857	166	3.5	163	89	2	746	25	17	21	34	1.95
33626--33734	29	3.7	28	71	14	94	34	12	4	47	1.62
33606--33787	60	3.0	60	77	7	201	32	17	4	45	1.68
37028--37143	42	2.8	42	89	2	162	18	15	18	48	1.82
37315--37365	21	2.3	23	86	10	70	50	0	0	49	1.00
37317--37393	23	3.3	23	79	13	70	45	0	0	54	0.99
37343--37477	31	4.4	31	75	18	88	45	0	0	52	1.11
37383--37452	30	2.2	30	82	7	77	51	1	1	45	1.18
37363--37508	28	5.0	28	72	18	93	47	0	1	50	1.14
37446--37507	25	2.3	24	82	17	70	46	0	1	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37524--37693	90	1.9	86	81	9	200	50	4	0	45	1.23
37657--37712	27	2.0	28	83	16	73	50	0	0	50	1.00
37671--37729	22	2.7	22	81	7	66	50	0	1	47	1.11
37837--37883	20	2.3	20	96	0	85	34	17	4	44	1.68
37869--37920	15	3.5	15	78	5	70	32	17	7	42	1.77
37837--37895	20	3.0	20	87	0	55	35	16	5	42	1.71
38127--38182	23	2.5	23	82	2	69	19	14	8	57	1.63
49808--49867	28	2.1	28	96	0	111	33	15	21	30	1.94
51387--51433	22	2.1	21	85	14	60	46	4	12	36	1.62
53202--53312	30	3.6	32	72	15	83	38	9	9	42	1.70
53393--53498	28	3.6	28	73	12	79	40	8	10	40	1.70
53409--53490	31	2.8	29	77	12	78	42	8	6	42	1.60
59733--59801	32	2.2	32	84	5	86	14	8	36	40	1.77
59744--59807	32	2.0	32	87	3	92	12	7	39	40	1.72
68556--68611	29	1.9	29	85	7	78	30	10	14	44	1.79
69890--69944	2	27.5	2	100	0	110	50	0	0	49	1.00
72950--73026	29	2.7	29	97	0	145	14	35	27	23	1.93
75041--75130	47	1.9	47	86	0	126	36	12	25	25	1.91
81483--81524	3	14.0	3	100	0	84	0	33	0	66	0.92
86770--86917	74	2.0	74	88	2	217	33	17	8	39	1.81
100007--100040	2	17.0	2	100	0	68	50	0	0	50	1.00
100497--100526	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101867--101995	60	2.2	59	80	8	145	31	14	15	38	1.88
102581--102608	5	5.6	5	100	0	56	60	0	0	39	0.97
107649--107697	21	2.3	22	86	10	75	36	10	8	44	1.68
107670--107730	32	1.9	32	89	0	95	34	9	9	45	1.70
108477--108584	31	3.6	30	81	6	119	36	9	12	41	1.76
108672--108724	27	1.9	28	84	3	72	41	13	11	33	1.80
112280--112485	28	7.5	28	86	4	240	36	0	13	49	1.45
112283--112481	12	16.6	12	86	8	262	36	0	13	49	1.46
113043--113308	42	6.8	40	77	14	220	48	4	4	42	1.43
113321--113381	18	3.7	16	76	17	54	40	1	6	50	1.38
113303--113399	31	3.2	32	82	7	112	41	1	6	51	1.34
113451--113518	3	22.7	3	79	11	77	30	4	0	64	1.13
113447--113518	25	2.8	25	83	6	92	30	4	0	65	1.12
113989--114026	15	2.5	15	83	8	51	60	28	10	0	1.30
119923--120576	84	7.9	82	80	4	635	30	24	20	24	1.99
119923--120596	165	4.1	162	80	6	630	30	24	20	24	1.99
119903--120461	245	2.3	246	92	2	967	30	24	20	25	1.99
121211--121493	42	7.4	39	74	15	220	47	3	4	43	1.43
121466--121572	32	3.5	31	81	11	132	42	0	5	50	1.32
121466--121572	30	3.5	32	82	8	134	42	0	5	50	1.32
121609--121673	3	21.7	3	78	12	71	30	4	0	64	1.14
122781--122824	18	2.4	18	96	0	79	20	52	13	13	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122803--122864	13	4.5	13	74	21	63	16	43	22	17	1.87
122785--122864	30	2.6	31	84	4	108	17	45	20	17	1.86
122820--122853	18	1.9	17	94	5	59	17	41	23	17	1.90
122854--122890	7	5.1	7	96	3	65	13	32	27	27	1.94
125332--125446	24	4.8	24	88	6	162	22	17	19	40	1.91
126380--126417	15	2.5	15	83	8	51	60	28	10	0	1.30
130087--130118	16	2.0	16	93	0	55	34	6	25	34	1.81
134162--134205	22	2.0	22	86	0	61	36	2	11	50	1.51
136417--136462	22	2.1	22	95	0	83	65	2	4	28	1.23
137400--137458	22	2.7	22	81	5	66	66	3	0	30	1.08
138921--138973	19	2.6	20	85	8	63	41	5	13	39	1.68
139870--139929	30	2.0	31	86	3	86	53	10	8	28	1.63
148075--148115	2	20.5	2	100	0	82	48	0	0	51	1.00
148453--148480	11	2.5	11	100	0	56	46	0	0	53	1.00
155432--155467	19	1.9	19	88	5	56	44	2	5	47	1.41
157006--157066	15	4.0	15	75	16	54	49	1	1	47	1.21
159481--159543	31	2.1	30	81	3	72	22	23	14	39	1.91

Tables:   1

The End!