Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003201.1 Hibiscus syriacus cultivar Beakdansim tig00006735_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96581

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9299--9332
6
5.5
6
86
6
50
79
0
2
17
0.86
12068--12123
10
5.2
11
78
10
53
66
0
1
32
1.03
12081--12120
21
2.0
20
90
5
62
62
0
0
37
0.95
12067--12118
11
4.9
11
76
9
54
63
0
1
34
1.06
12244--12744
123
4.1
123
93
1
846
25
19
16
37
1.93
12244--12744
243
2.0
244
93
1
851
25
19
16
37
1.93
23660--23732
37
2.0
37
84
10
96
60
1
0
38
1.06
23691--23743
23
2.3
22
81
9
61
64
0
3
32
1.12
25703--25753
3
18.3
3
84
11
65
66
0
0
33
0.92
25707--25758
8
6.2
8
76
14
52
69
0
0
30
0.89
25704--25758
17
3.1
17
81
5
65
69
0
0
30
0.89
25703--25753
14
3.7
14
77
12
61
66
0
0
33
0.92
32066--32482
132
3.2
132
78
6
450
31
17
18
32
1.94
32822--32864
22
2.0
22
86
9
61
39
2
0
58
1.11
32832--32898
7
9.1
7
75
15
55
38
0
4
56
1.19
32832--32864
10
2.9
12
82
17
52
39
0
0
60
0.97
32834--32863
15
2.0
15
93
0
51
36
0
0
63
0.95
37007--37048
2
21.0
2
100
0
84
50
0
0
50
1.00
38668--38725
17
3.5
16
81
11
64
31
13
13
41
1.84
38732--38790
17
3.5
17
68
13
50
28
16
8
45
1.77
42173--42238
34
2.0
33
82
8
80
31
19
6
42
1.76
43314--43340
14
1.9
14
100
0
54
44
7
0
48
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45507--45561
17
3.3
16
77
7
56
29
12
16
41
1.85
48908--48965
17
3.5
17
80
2
64
31
13
13
41
1.84
48908--48982
17
4.5
17
81
1
62
30
12
17
40
1.86
49021--49082
17
3.6
17
80
6
54
35
12
11
40
1.80
54892--54926
18
2.0
18
94
5
63
74
0
2
22
0.95
54931--54959
5
6.0
5
92
8
51
58
0
0
41
0.98
56288--56321
17
1.9
18
94
5
61
52
5
0
41
1.25
56640--56701
20
3.2
20
84
4
83
0
32
1
66
1.02
56642--56699
7
8.6
7
76
12
50
0
32
1
65
1.03
56626--56701
27
2.9
27
77
13
77
2
31
1
64
1.15
57368--57412
17
2.6
18
92
7
83
42
13
0
44
1.43
63240--63313
25
2.9
26
72
11
71
37
33
0
28
1.58
63202--63322
51
2.4
51
80
0
134
37
34
0
27
1.63
63613--63668
29
2.0
29
82
3
69
35
7
28
28
1.84
64790--64814
13
1.9
13
100
0
50
16
48
24
12
1.79
64786--64824
18
2.2
17
86
4
51
17
43
23
15
1.87
64832--64913
29
2.8
29
94
0
146
23
10
21
43
1.84
64832--64934
29
3.6
28
84
7
91
26
9
22
41
1.84
64891--64963
29
2.5
28
82
8
83
31
6
20
41
1.79
72225--72259
17
2.0
18
88
5
54
17
45
22
14
1.84
72267--72347
28
2.8
29
83
3
101
22
7
22
48
1.75
77887--78406
266
2.0
265
91
1
853
36
14
19
29
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78926--78965
19
2.1
19
86
9
55
42
2
20
35
1.65
81128--81161
13
2.5
14
90
9
61
17
14
0
67
1.23
88883--88922
19
2.1
19
95
0
71
20
22
22
35
1.96
92531--92584
20
2.7
19
75
8
63
33
31
18
16
1.93
92571--92688
20
5.8
20
68
14
62
38
22
17
22
1.94
92634--92884
20
12.5
20
76
10
183
38
23
17
20
1.93
92672--92892
41
5.5
41
80
10
219
37
22
18
21
1.95
92672--92887
61
3.6
60
80
10
201
37
22
18
20
1.94
93733--93792
24
2.5
24
83
0
84
25
18
18
38
1.93
95591--95662
19
4.1
19
76
20
75
12
16
22
48
1.79
95601--95694
33
2.8
33
90
3
127
12
20
21
45
1.84
95636--95694
19
3.4
19
73
22
74
13
22
18
45
1.84
95644--95694
17
3.1
17
69
25
54
13
23
17
45
1.84
96254--96581
94
3.5
94
97
0
595
47
19
12
20
1.81

Tables:   1

The End!