genome.fa.s3203.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003203.1 Hibiscus syriacus cultivar Beakdansim tig00006742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64054

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3149--3187	2	19.0	2	94	5	69	48	0	2	48	1.15
12807--12849	21	2.0	21	86	0	59	9	34	16	39	1.80
13427--13506	31	2.6	31	89	0	115	31	2	33	32	1.71
13504--13532	13	2.3	13	94	5	51	48	13	0	37	1.43
18915--18942	2	14.0	2	100	0	56	50	0	0	50	1.00
18942--18969	2	14.0	2	100	0	56	0	0	50	50	1.00
19559--19634	14	5.0	14	70	17	53	38	18	10	32	1.85
19559--19665	31	3.5	31	84	0	106	37	17	10	34	1.84
19550--19618	17	4.2	17	81	10	81	39	20	10	30	1.85
19586--19642	17	3.5	17	69	13	57	36	19	12	31	1.89
19648--19705	20	2.9	20	86	0	80	48	15	10	25	1.77
20206--20233	14	2.0	14	100	0	56	35	14	14	35	1.86
20216--20289	17	4.4	17	71	10	71	41	17	6	33	1.76
20313--20354	20	2.1	20	90	0	66	54	14	9	21	1.68
20831--20873	21	2.0	21	86	0	59	69	2	20	6	1.23
22238--22266	14	2.1	14	100	0	58	31	27	6	34	1.83
22411--22469	31	1.9	30	86	13	84	45	10	1	42	1.48
24772--24819	23	2.0	23	92	4	78	41	10	6	41	1.64
29396--29766	186	2.0	184	97	2	708	35	21	21	22	1.96
30407--30499	21	4.5	21	75	4	91	40	16	24	18	1.90
30407--30499	41	2.3	41	96	0	168	40	16	24	18	1.90
30426--30560	41	3.3	41	82	4	130	39	19	20	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30488--30581	20	4.7	20	80	2	89	34	24	17	24	1.96
31098--31164	19	3.5	19	85	2	89	49	25	14	10	1.76
31160--31344	19	10.1	19	76	14	165	12	22	21	43	1.86
31160--31344	33	5.1	38	78	12	165	12	22	21	43	1.86
31287--31344	20	2.9	20	77	10	55	15	24	17	43	1.87
33344--33466	42	2.9	42	80	2	122	22	36	17	22	1.95
33400--33466	21	3.2	21	66	6	55	23	35	20	19	1.95
34822--34855	14	2.4	14	95	0	59	32	0	23	44	1.54
35036--35186	19	8.7	19	61	21	62	15	21	20	41	1.90
35040--35166	33	3.9	32	84	8	175	15	22	19	42	1.89
35033--35165	66	2.0	66	94	0	230	17	21	19	41	1.90
35139--35193	20	2.8	19	76	13	58	20	20	23	36	1.95
37459--37483	12	2.1	12	100	0	50	0	28	0	72	0.86
37658--37711	24	2.2	24	90	0	81	38	20	16	24	1.92
38771--38828	20	2.9	20	94	0	98	37	22	22	17	1.93
40894--40960	19	3.5	19	81	4	80	38	23	22	14	1.92
40949--41006	14	3.9	14	79	16	71	50	24	17	8	1.74
40944--41011	32	2.1	33	94	2	120	51	22	17	8	1.72
41040--41097	14	3.9	14	79	16	71	10	17	24	48	1.78
41023--41113	32	2.8	33	93	3	157	13	18	20	47	1.82
41098--41141	20	2.2	20	84	4	54	20	25	18	36	1.95
41107--41152	20	2.3	20	88	0	65	15	21	26	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41619--41663	18	2.5	18	88	0	72	13	15	44	26	1.83
42983--43020	20	1.9	20	88	0	58	50	21	15	13	1.78
43284--43327	22	2.0	22	95	0	79	18	15	45	20	1.85
43515--43608	20	4.7	20	80	2	89	23	18	24	34	1.96
43495--43609	20	5.7	20	78	5	88	23	17	23	35	1.95
43598--43690	20	4.5	21	75	4	91	18	24	17	39	1.91
43537--43671	41	3.3	41	81	4	130	20	21	20	38	1.94
43598--43686	41	2.2	41	97	0	169	17	24	15	41	1.89
51355--51464	24	4.6	24	87	4	150	38	20	15	25	1.92
55946--56064	24	5.0	24	86	4	168	39	19	14	26	1.90
55946--56082	48	2.9	47	84	4	175	40	18	13	27	1.89
57663--57698	17	2.1	18	89	5	56	36	13	2	47	1.58
58542--58604	18	3.6	18	84	2	92	14	17	47	20	1.82
63146--63456	157	2.0	161	92	3	524	38	13	14	33	1.85

Tables:   1

The End!