genome.fa.s3204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003204.1 Hibiscus syriacus cultivar Beakdansim tig00006743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68185

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436--573	49	2.8	49	87	0	204	36	17	19	26	1.94
5217--5256	21	1.9	21	85	10	55	35	10	2	52	1.48
7238--7335	45	2.2	45	87	3	144	30	19	23	26	1.98
17202--17240	17	2.3	17	90	0	60	46	33	15	5	1.68
19986--20157	53	3.3	52	79	4	168	34	5	36	23	1.77
20143--20326	18	10.6	18	70	15	75	6	4	43	45	1.49
20180--20326	6	24.5	6	80	0	168	4	3	46	45	1.41
20146--20320	30	5.7	30	74	12	122	6	4	42	46	1.49
20696--20829	61	2.2	61	90	2	207	35	8	7	49	1.61
20915--21012	2	49.0	2	68	22	55	46	4	3	45	1.37
20889--20985	51	1.9	51	93	0	167	44	6	6	43	1.54
20931--21069	33	4.0	33	71	18	104	46	5	4	43	1.47
20898--21068	9	19.7	9	67	22	64	45	6	4	43	1.50
21132--21165	15	2.3	15	90	5	52	52	0	5	41	1.25
21135--21259	27	4.7	27	87	1	153	49	4	6	39	1.50
21294--21396	44	2.3	44	80	9	113	41	4	8	44	1.56
21762--22104	2	171.5	2	66	20	139	47	4	3	44	1.40
21898--21931	15	2.2	16	94	5	61	47	2	5	44	1.42
21734--22106	20	18.0	20	71	15	176	46	4	4	44	1.41
23099--23270	53	3.3	52	79	4	168	34	5	36	23	1.77
23256--23439	18	10.6	18	70	15	75	6	4	43	45	1.49
23293--23439	6	24.5	6	80	0	168	4	3	46	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23259--23433	30	5.7	30	74	12	122	6	4	42	46	1.49
23809--23942	61	2.2	61	90	2	207	35	8	7	49	1.61
24028--24121	2	47.0	2	70	19	63	46	3	3	46	1.34
23975--24092	28	4.6	25	72	19	84	44	4	5	44	1.47
24045--24117	28	2.5	28	80	17	85	47	2	2	46	1.31
23975--24049	33	2.7	27	74	24	50	45	4	6	44	1.48
24001--24129	17	7.9	16	66	27	67	44	4	5	44	1.47
24034--24187	60	2.5	61	78	12	145	44	5	5	44	1.50
24241--24274	15	2.3	15	90	5	52	52	0	5	41	1.25
24244--24368	27	4.7	27	87	1	153	49	4	6	39	1.50
24403--24505	44	2.3	44	80	9	113	41	4	8	44	1.56
24758--24804	22	2.2	21	88	3	67	46	2	2	48	1.25
24843--24906	20	3.2	20	80	12	78	40	6	6	46	1.54
24881--25167	2	143.5	2	71	17	197	47	3	3	44	1.39
24881--25160	29	9.5	30	71	19	164	47	3	3	44	1.40
31263--31292	15	2.0	15	100	0	60	13	6	46	33	1.69
37549--37589	16	2.6	16	84	11	57	46	0	17	36	1.48
39991--40226	54	4.4	54	87	0	319	28	20	19	31	1.97
40565--40768	95	2.1	95	82	1	257	28	24	11	35	1.91
48744--48773	14	2.1	14	93	0	51	33	0	0	66	0.92
51401--51479	24	3.5	24	74	13	85	35	15	17	31	1.91
51395--51480	44	2.0	44	92	0	145	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51823--51873	19	2.7	19	93	0	84	49	3	11	35	1.58
53728--53772	18	2.3	20	92	7	76	71	11	0	17	1.14
54248--54301	20	2.5	23	82	11	62	31	14	22	31	1.94
54268--54320	20	2.5	22	87	6	74	32	11	20	35	1.88
54307--54358	22	2.4	22	93	0	86	40	5	21	32	1.77
58989--59042	19	2.8	20	86	5	60	18	27	31	22	1.97
59036--59073	5	7.8	5	82	5	51	21	55	18	5	1.62
59008--59068	19	3.2	19	83	4	61	19	42	22	14	1.88
59070--59100	7	4.4	7	100	0	62	16	29	29	25	1.96
59025--59087	24	2.5	24	69	23	58	17	44	22	15	1.86
66222--66270	17	2.8	18	90	9	75	16	18	32	32	1.93
66267--66316	24	2.0	24	88	7	73	20	40	22	18	1.92
66259--66316	21	2.5	23	83	13	66	18	37	24	18	1.94

Tables:   1

The End!