genome.fa.s3205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003205.1 Hibiscus syriacus cultivar Beakdansim tig00006744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57367

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8309--8351	22	2.0	22	86	9	61	44	18	6	30	1.76
12787--12832	18	2.5	18	89	10	67	0	32	23	43	1.54
12797--12847	18	2.8	19	85	5	52	1	27	25	45	1.64
14028--14108	22	3.7	22	83	6	94	19	27	29	23	1.98
17914--17953	21	1.9	21	85	10	55	35	10	2	52	1.48
21879--21923	23	2.0	23	86	0	63	26	26	24	22	2.00
21891--22205	149	2.1	149	92	3	519	34	21	17	26	1.95
23098--23132	18	1.9	18	88	11	54	22	17	5	54	1.64
23718--23762	21	2.1	21	91	0	72	17	24	26	31	1.97
26897--26941	23	2.0	23	90	0	72	24	26	26	22	2.00
26909--27223	149	2.1	149	94	3	546	33	21	18	26	1.96
27972--27997	2	13.0	2	100	0	52	50	0	0	50	1.00
28124--28157	18	1.9	18	88	5	52	23	17	5	52	1.66
28735--28779	21	2.1	21	87	0	63	15	24	28	31	1.96
34850--35015	32	5.3	31	78	12	162	32	18	18	30	1.95
34850--35015	63	2.7	63	96	0	298	32	18	18	30	1.95
34853--35040	31	6.0	31	77	11	195	30	19	19	30	1.96
35027--35098	30	2.4	30	85	0	90	20	22	26	30	1.98
37236--37296	23	2.7	23	84	0	77	34	21	16	27	1.95
37296--37335	21	1.9	21	85	10	55	20	20	32	27	1.97
42907--42960	20	2.7	20	82	5	65	40	11	24	24	1.87
43585--43637	23	2.4	23	87	6	74	20	22	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44385--44457	3	24.3	3	100	0	146	32	0	0	67	0.91
47577--47635	21	2.8	21	78	2	73	37	11	18	32	1.87
48193--48231	15	2.7	15	96	4	71	30	12	7	48	1.69
48243--48431	5	37.8	5	99	0	369	60	0	0	39	1.01
48717--48754	18	2.1	19	90	5	60	44	7	10	36	1.68
49582--49642	27	2.3	27	94	0	104	29	9	26	34	1.88

Tables:   1

The End!