genome.fa.s3206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003206.1 Hibiscus syriacus cultivar Beakdansim tig00006746_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62100

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1638--1703	31	2.1	31	100	0	132	34	16	0	48	1.47
7579--7605	14	1.9	14	100	0	54	25	22	22	29	1.99
7641--7795	64	2.4	65	78	10	158	34	19	18	27	1.95
8170--8299	29	4.8	29	79	18	163	45	16	20	17	1.86
8178--8281	49	2.0	51	90	7	167	44	18	20	17	1.87
8384--8412	15	1.9	15	100	0	58	13	27	31	27	1.94
14084--14124	21	2.0	21	100	0	82	26	19	19	34	1.96
14160--14313	63	2.4	63	77	11	154	35	18	18	27	1.94
14689--14769	29	2.8	29	94	3	137	45	14	22	17	1.84
14854--14887	15	2.3	15	89	0	50	14	17	32	35	1.91
19218--19269	25	2.2	25	86	13	74	55	5	7	30	1.52
23663--23750	29	3.0	30	78	6	90	18	21	11	48	1.79
23663--23750	30	3.0	30	81	3	106	18	21	11	48	1.79
32624--32688	23	2.8	23	92	0	112	38	21	6	33	1.78
33115--33179	23	2.8	23	92	0	112	38	21	6	33	1.78
33603--33675	23	3.2	23	92	0	119	38	21	5	34	1.77
32223--34016	488	3.7	488	96	0	3270	40	10	7	41	1.67
34015--34234	87	2.5	87	97	0	413	42	9	15	32	1.79
37445--37674	120	1.9	120	96	0	424	38	16	14	30	1.88
37673--38304	183	3.5	183	95	1	1110	33	17	14	35	1.90
39502--39535	9	3.8	9	92	0	59	32	26	8	32	1.87
41019--41980	200	4.8	200	93	0	1606	30	18	14	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42202--42262	19	3.3	18	88	2	59	52	11	1	34	1.47
42214--42262	19	2.6	19	96	0	89	55	10	2	32	1.45
44123--44186	21	3.1	20	90	4	92	17	31	10	40	1.84
46536--46596	20	3.0	20	83	4	79	18	14	11	55	1.68
46324--46792	180	2.6	182	88	2	669	27	15	13	42	1.85
48012--48081	28	2.6	27	82	8	81	20	8	0	71	1.11
51601--51651	23	2.2	24	85	3	68	29	21	7	41	1.81
52004--52147	64	2.3	63	86	4	200	25	17	18	38	1.92
52027--52189	64	2.5	64	80	5	188	28	20	17	33	1.96
61778--61829	23	2.3	23	80	6	72	17	21	40	21	1.91

Tables:   1

The End!