Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003207.1 Hibiscus syriacus cultivar Beakdansim tig00006749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54293

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--54
18
1.9
18
88
5
52
29
20
0
50
1.49
3217--3257
2
20.5
2
100
0
82
51
0
0
48
1.00
3323--3419
35
2.8
35
87
0
149
27
30
31
9
1.88
3505--3619
24
4.8
24
87
6
162
38
20
16
25
1.93
3499--3619
47
2.6
47
88
4
163
39
19
15
24
1.91
5227--5267
18
2.3
18
82
0
55
12
14
51
21
1.75
6854--6946
12
7.8
12
67
17
59
43
20
13
22
1.87
6842--6989
24
6.2
24
87
4
102
43
20
13
22
1.87
6860--7021
72
2.3
72
85
3
220
44
19
12
24
1.84
6859--7016
24
6.6
24
86
2
192
43
19
13
24
1.87
8123--8174
17
3.0
17
85
2
68
25
23
3
48
1.68
13058--13118
20
2.9
21
87
7
79
18
26
34
21
1.96
21200--21275
24
3.2
24
86
3
82
44
19
13
22
1.85
21217--21328
24
4.7
24
89
6
156
39
19
16
25
1.91
21217--21350
48
2.8
48
83
2
135
41
18
14
25
1.88
22459--22509
17
2.9
17
94
2
84
29
21
0
49
1.50
25035--25319
87
3.3
88
89
2
434
45
10
10
33
1.74
25613--25973
179
2.0
177
97
1
677
48
9
11
29
1.73
26544--26592
17
3.0
16
80
11
55
65
0
2
32
1.04
27657--27710
27
2.0
27
96
0
99
14
12
29
42
1.83
28410--28441
2
16.0
2
100
0
64
50
0
0
50
1.00
28349--28426
29
2.7
30
76
6
97
42
8
0
48
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28578--28610
5
6.4
5
93
6
57
81
0
0
18
0.68
28978--29026
2
26.5
2
80
15
61
44
0
0
55
0.99
28978--29026
7
6.7
7
93
6
80
44
0
0
55
0.99
28978--29037
29
2.1
29
87
6
86
43
0
1
55
1.10
34180--34527
84
4.2
84
81
5
365
28
26
20
23
1.99
34580--34657
37
2.1
37
92
2
131
29
24
12
33
1.92
34673--34757
35
2.4
35
86
2
107
25
21
14
38
1.91
34585--34849
100
2.6
100
94
1
449
29
21
13
35
1.91
34773--34896
36
3.4
36
75
5
115
24
20
14
41
1.89
34910--35878
106
9.4
106
92
3
1448
33
25
18
22
1.97
35550--35702
43
3.3
43
66
18
119
33
26
16
22
1.95
36690--36752
2
33.5
2
84
12
89
46
0
0
53
1.00
36690--36752
17
3.9
17
92
8
98
46
0
0
53
1.00
36690--36753
19
3.7
18
90
10
91
46
0
0
53
1.00
38903--38954
26
2.0
26
100
0
104
53
3
15
26
1.59
39818--39860
17
2.4
18
80
11
52
46
37
11
4
1.61
40801--41001
108
1.9
107
84
3
269
20
14
18
46
1.84
41862--42385
131
4.0
131
84
4
648
32
10
16
39
1.84
52868--52948
7
11.3
7
89
7
119
82
0
13
3
0.79

Tables:   1

The End!