Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003209.1 Hibiscus syriacus cultivar Beakdansim tig00006755_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53754

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
913--968
20
2.8
19
81
10
58
42
0
7
50
1.30
2069--2118
20
2.5
20
81
9
59
50
0
2
48
1.12
4198--4222
12
2.1
12
100
0
50
44
16
8
32
1.76
4365--4427
12
5.3
12
75
17
53
38
23
1
36
1.65
5948--6021
17
4.3
17
78
8
87
43
10
10
35
1.75
5948--6021
35
2.1
34
85
7
96
43
10
10
35
1.75
9355--9407
22
2.4
22
100
0
106
16
16
18
47
1.83
13907--13945
21
2.0
20
85
10
53
41
17
12
28
1.87
20627--20680
22
2.5
22
88
5
76
29
16
25
27
1.97
20551--20773
95
2.3
95
83
3
252
35
15
24
24
1.94
21176--21241
20
3.3
20
84
0
96
40
9
30
19
1.83
21312--21385
20
3.4
20
76
20
85
43
9
21
25
1.83
21218--21412
46
4.1
46
83
8
239
45
10
18
25
1.81
21234--21371
26
5.5
26
81
10
162
44
11
18
25
1.83
29609--29839
40
5.7
40
72
5
140
29
20
16
33
1.94
29580--29984
42
9.8
42
76
4
279
29
21
17
31
1.96
29663--29899
123
1.9
123
93
0
411
29
23
17
29
1.97
29843--30004
84
1.9
84
80
5
184
31
22
16
29
1.96
33066--33093
11
2.5
11
100
0
56
53
25
0
21
1.46
33079--33263
43
4.1
43
80
10
190
40
22
18
18
1.91
33111--33210
51
2.0
51
91
0
164
40
24
19
17
1.91
33079--33253
94
1.9
94
86
0
251
40
22
18
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34903--35381
49
9.8
49
84
3
617
28
19
13
38
1.90
40990--41518
49
10.8
49
85
1
693
28
19
13
38
1.90
43513--43561
3
16.3
3
82
0
62
59
0
6
34
1.22
43513--43561
12
4.1
12
89
0
71
59
0
6
34
1.22
43741--44171
134
3.2
132
80
3
443
31
15
19
34
1.93
45422--45476
17
3.2
17
94
2
92
10
14
0
74
1.07
45422--45493
34
2.1
35
82
12
87
8
15
0
76
1.01
49571--49634
33
1.9
34
96
3
121
25
20
25
29
1.99
51964--52004
21
1.9
22
85
5
57
17
17
7
58
1.60
53478--53525
21
2.3
21
80
20
57
45
16
4
33
1.67

Tables:   1

The End!