Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003210.1 Hibiscus syriacus cultivar Beakdansim tig00006760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127762

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2316--2355
21
2.0
20
85
5
53
40
7
2
50
1.44
4420--4465
24
1.9
24
81
0
56
17
41
2
39
1.62
12042--12097
24
2.4
23
82
8
69
44
14
0
41
1.45
21442--21478
19
1.9
19
100
0
74
59
18
10
10
1.59
21429--21504
33
2.3
33
84
4
91
57
18
9
14
1.63
21428--21461
14
2.5
14
85
4
52
55
20
11
11
1.67
28177--28245
17
3.8
17
76
16
59
53
1
2
42
1.24
28195--28245
21
2.7
18
80
16
59
50
1
1
45
1.24
28439--28472
13
2.7
13
86
4
52
82
0
17
0
0.67
35533--35590
12
5.1
12
71
12
50
34
1
1
62
1.16
46196--46220
1
25.0
1
100
0
50
100
0
0
0
0.00
47017--47691
106
6.4
106
95
1
1115
32
25
19
22
1.98
52559--52588
2
15.0
2
100
0
60
50
0
0
50
1.00
61186--61212
3
9.0
3
100
0
54
66
0
0
33
0.92
63221--63273
17
2.9
17
81
15
54
64
0
3
32
1.12
69734--69786
19
2.7
19
91
2
79
71
7
3
16
1.24
80926--81095
60
2.8
60
76
4
155
45
7
18
29
1.75
84872--84924
2
27.0
2
78
17
58
50
3
1
43
1.30
86182--86214
2
16.5
2
100
0
66
48
0
0
51
1.00
92399--92464
33
2.1
31
86
8
89
36
24
15
24
1.93
92992--93032
21
2.0
21
85
0
55
17
26
24
31
1.97
95708--95817
35
3.1
35
67
23
93
35
23
14
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95807--95872
33
2.1
31
88
8
98
36
25
15
22
1.93
96680--96787
55
2.0
54
92
1
180
41
21
6
30
1.78
98463--98493
16
1.9
16
93
0
53
38
16
6
38
1.74
102753--102798
23
2.0
23
100
0
92
17
34
8
39
1.80
112769--112838
24
2.9
24
78
0
77
45
17
11
25
1.81
113532--113605
29
2.5
28
82
8
85
39
25
5
29
1.78
113672--113715
10
4.6
10
80
8
56
36
29
20
13
1.91
113672--113716
19
2.4
19
92
0
72
35
28
20
15
1.93
119782--119851
24
2.9
24
78
0
77
45
17
11
25
1.81
120543--120616
29
2.5
28
82
8
85
39
25
5
29
1.78
120652--120693
17
2.4
18
92
4
68
9
21
50
19
1.75
122212--122297
44
2.0
44
95
0
154
45
0
4
50
1.22
123796--123839
3
14.7
3
95
0
79
68
0
0
31
0.90

Tables:   1

The End!