Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003212.1 Hibiscus syriacus cultivar Beakdansim tig00006763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83104

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8535--8612
34
2.3
35
88
6
115
33
5
17
43
1.72
22373--22411
2
19.5
2
100
0
78
48
0
0
51
1.00
22609--22736
64
2.0
66
92
4
215
50
12
3
33
1.59
29688--29772
43
2.0
42
93
2
143
45
8
10
35
1.69
31147--31184
19
2.1
18
95
5
67
73
0
0
26
0.83
31710--31833
37
3.3
36
86
5
167
30
12
13
43
1.81
31710--31773
18
3.3
21
62
20
57
28
12
15
43
1.83
32292--32563
83
3.3
83
81
5
291
25
19
23
32
1.97
32629--32744
36
3.2
36
79
7
126
41
13
18
26
1.88
33687--33781
32
2.9
32
88
1
145
36
21
11
30
1.89
34840--34890
27
2.0
25
88
11
77
3
17
3
74
1.12
34841--34890
13
4.0
12
80
16
57
2
18
4
76
1.04
36880--36948
34
2.1
31
86
7
93
21
30
15
31
1.95
37231--37293
21
3.0
21
95
0
108
25
26
22
25
2.00
37407--37521
35
3.3
35
95
1
196
19
25
34
20
1.96
37456--37530
20
4.0
20
71
25
74
17
29
34
18
1.94
39504--39534
14
2.1
15
94
5
55
3
32
0
64
1.09
40994--41034
20
2.0
20
90
9
66
17
29
36
17
1.92
42573--42619
20
2.4
20
82
3
60
63
8
12
14
1.50
42623--42666
22
2.1
20
87
8
61
75
0
2
22
0.92
43192--43266
37
2.0
37
94
0
132
36
13
10
40
1.79
44993--45034
16
2.4
18
82
17
54
38
21
0
40
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45186--45243
31
1.9
29
89
6
89
50
15
10
24
1.75
57354--57410
2
29.0
2
96
3
107
50
0
0
49
1.00
58251--58317
2
33.5
2
100
0
134
50
0
0
49
1.00
63051--63083
13
2.4
14
90
5
50
12
30
54
3
1.52

Tables:   1

The End!