genome.fa.s3213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003213.1 Hibiscus syriacus cultivar Beakdansim tig00006766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119455

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5038--5070	15	2.1	16	94	5	59	6	24	18	51	1.68
9599--9632	16	2.1	16	94	0	59	38	26	5	29	1.80
17845--18176	164	2.0	164	89	2	506	22	15	15	46	1.83
33499--33550	21	2.5	20	76	11	52	44	7	0	48	1.31
33510--33553	21	2.1	21	86	0	61	43	11	0	45	1.40
34843--34887	21	2.2	20	84	4	54	46	26	0	26	1.53
37036--37098	19	3.3	19	70	12	65	31	20	17	30	1.96
36959--37186	39	5.8	39	82	2	208	29	19	15	34	1.93
36959--37179	78	2.8	78	79	1	237	29	20	15	34	1.93
39785--39846	31	2.0	31	93	0	106	20	14	38	25	1.91
39850--39903	22	2.5	22	90	3	92	20	27	35	16	1.94
39947--40034	29	3.0	29	81	0	104	21	32	30	14	1.94
40531--40706	43	4.1	43	92	0	280	26	22	22	28	1.99
40556--40739	43	4.3	43	88	3	203	26	22	22	29	1.99
40556--40762	86	2.4	86	80	3	238	28	22	22	27	1.99
41269--41641	41	9.0	41	81	0	377	32	19	19	27	1.96
41288--41641	82	4.3	83	87	1	433	33	19	18	28	1.96
42277--42329	23	2.3	23	93	0	88	54	11	13	20	1.69
42344--42385	20	2.0	21	86	13	61	71	4	4	19	1.22
43524--43586	2	31.5	2	100	0	126	50	0	0	49	1.00
43649--43748	35	2.9	35	93	1	166	28	30	32	10	1.89
43816--43963	24	6.2	24	89	4	102	41	20	13	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43833--43972	24	5.8	24	92	3	219	39	20	14	26	1.90
43840--43995	72	2.2	72	84	3	208	42	19	12	25	1.87
45753--45825	36	2.0	36	97	0	137	28	20	8	42	1.81
53088--53146	30	2.0	30	86	6	84	38	18	27	15	1.91
59206--59248	18	2.4	18	88	0	59	44	4	48	2	1.36
59202--59236	2	17.5	2	93	0	61	48	0	51	0	1.00
59887--59930	20	2.2	20	84	4	54	34	0	2	63	1.07
62672--62700	14	2.1	14	100	0	58	31	48	6	13	1.69
66641--66684	24	1.9	22	82	17	54	20	0	6	72	1.07
70223--70255	2	16.5	2	100	0	66	48	0	0	51	1.00
77758--77801	2	22.0	2	100	0	88	50	0	0	50	1.00
90205--90243	6	6.5	6	100	0	78	33	15	35	15	1.89
97223--97264	15	2.7	15	88	3	57	26	0	2	71	0.98
97231--97276	20	2.2	21	88	3	67	26	0	2	71	0.97
97239--97280	20	2.1	20	91	8	68	23	0	0	76	0.79
97529--97580	20	2.5	21	87	3	79	75	0	0	25	0.81
97547--97584	15	2.5	15	91	4	58	73	0	0	26	0.83
97531--97593	28	2.3	28	83	2	83	73	1	0	25	0.93
101240--101313	37	2.0	36	84	7	96	51	2	0	45	1.15
101905--101945	15	2.7	15	92	3	64	53	2	0	43	1.13
105969--106017	21	2.3	21	78	0	53	34	12	10	42	1.76
106924--106987	23	2.7	23	76	7	67	50	3	3	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114912--114936	1	25.0	1	100	0	50	0	0	0	100	0.00
116437--116964	179	3.0	178	89	8	814	42	3	8	45	1.51
116291--116971	174	4.0	177	85	10	881	42	3	9	44	1.54
117038--117069	16	1.9	17	93	6	57	37	25	12	25	1.91

Tables:   1

The End!