Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003214.1 Hibiscus syriacus cultivar Beakdansim tig00006767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94353
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:6849 original size:152 final size:154
Alignment explanation
Indices: 6545--6851 Score: 465
Period size: 152 Copynumber: 2.0 Consensus size: 154
6535 ATGTAATTTA
* *
6545 AGGAGACGGTACTATTTTTATTTAGTGAAAGACATATGGACTTATATTTCCCAATTTCTTTCCCC
1 AGGAGACAGTACTATTTTTATTTAGTGAAAGACATATGGACTTATATTTCCAAATTTCTTTCCCC
* ** *
6610 ATAAAAGAAGTAAATTGTATATTTGGACATTTGTGGTTCTGGATGATACTAGCATCTTCCGTTTT
66 ATAAAAGAAGTAAATTGTACATTTGGACATTTGTGGTTCCAGATGATACTAGCATCTTCCGTTTC
6675 TCTTTTGATGGGTCATCATAACTT
131 TCTTTTGATGGGTCATCATAACTT
* * * *
6699 AGGAGACAGTATTA-TTTTGTTTGGTGAAAGACATATGTACTTATATTTCCAAATTTCTTTCCCC
1 AGGAGACAGTACTATTTTTATTTAGTGAAAGACATATGGACTTATATTTCCAAATTTCTTTCCCC
* * * *
6763 ATAATAGAAGT-AATTGTGCATTTGGACATTTGTGGTTCCAGATGTTACTAGCATCTTCTGTTTC
66 ATAAAAGAAGTAAATTGTACATTTGGACATTTGTGGTTCCAGATGATACTAGCATCTTCCGTTTC
*
6827 TCTTTTGATGGGTCATCGTAACTT
131 TCTTTTGATGGGTCATCATAACTT
6851 A
1 A
6852 AATTTGGTGA
Statistics
Matches: 138, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
152 70 0.51
153 56 0.41
154 12 0.09
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (154 bp):
AGGAGACAGTACTATTTTTATTTAGTGAAAGACATATGGACTTATATTTCCAAATTTCTTTCCCC
ATAAAAGAAGTAAATTGTACATTTGGACATTTGTGGTTCCAGATGATACTAGCATCTTCCGTTTC
TCTTTTGATGGGTCATCATAACTT
Found at i:17571 original size:29 final size:29
Alignment explanation
Indices: 17539--17618 Score: 83
Period size: 31 Copynumber: 2.7 Consensus size: 29
17529 GGATTTTGTG
17539 AGTGACCAAATTATAAAATTTT-AAAGTTT
1 AGTGACCAAATTAT-AAATTTTGAAAGTTT
* *
17568 AGTGATCAAAGTATAAATTTTGGAAAAGTTT
1 AGTGACCAAATTATAAATTTT-G-AAAGTTT
* *
17599 AGGGACCAAATTGT-AATTTT
1 AGTGACCAAATTATAAATTTT
17619 AAAAAATTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
28 7 0.17
29 12 0.29
30 6 0.14
31 17 0.40
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.36
Consensus pattern (29 bp):
AGTGACCAAATTATAAATTTTGAAAGTTT
Found at i:18619 original size:29 final size:31
Alignment explanation
Indices: 18587--18645 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 31
18577 GAAAAATTTA
*
18587 GGGACCATTTTG-TAATTTT-GAAAAGTTGG
1 GGGACCAATTTGATAATTTTGGAAAAGTTGG
18616 GGGACCAATTTGATAATTTTGGAAAAGTTG
1 GGGACCAATTTGATAATTTTGGAAAAGTTG
18646 TGGATGGTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.41
30 7 0.26
31 9 0.33
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.36
Consensus pattern (31 bp):
GGGACCAATTTGATAATTTTGGAAAAGTTGG
Found at i:22494 original size:9 final size:9
Alignment explanation
Indices: 22482--22543 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
22472 AAAAAAAGTT
22482 AAAAATAAG
1 AAAAATAAG
22491 AAAAAATTAAG
1 -AAAAA-TAAG
22502 AAAAATAAG
1 AAAAATAAG
*
22511 AAAAAAGAAG
1 -AAAAATAAG
* *
22521 AAAAAGAAT
1 AAAAATAAG
*
22530 AAGAATAAG
1 AAAAATAAG
22539 AAAAA
1 AAAAA
22544 AAACAGAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
9 22 0.50
10 18 0.41
11 4 0.09
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (9 bp):
AAAAATAAG
Found at i:22495 original size:10 final size:10
Alignment explanation
Indices: 22482--22565 Score: 75
Period size: 10 Copynumber: 8.5 Consensus size: 10
22472 AAAAAAAGTT
22482 AAAAATAAGA
1 AAAAATAAGA
22492 AAAAATTAAG-
1 AAAAA-TAAGA
22502 AAAAATAAGA
1 AAAAATAAGA
*
22512 AAAAAGAAG-
1 AAAAATAAGA
* *
22521 AAAAAGAA-T
1 AAAAATAAGA
*
22530 AAGAATAAGA
1 AAAAATAAGA
*
22540 AAAAAAACAGA
1 AAAAATA-AGA
*
22551 AAAAAAAAGA
1 AAAAATAAGA
22561 AAAAA
1 AAAAA
22566 AACAAGAGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
9 18 0.29
10 31 0.49
11 14 0.22
ACGTcount: A:0.80, C:0.01, G:0.12, T:0.07
Consensus pattern (10 bp):
AAAAATAAGA
Found at i:22514 original size:28 final size:28
Alignment explanation
Indices: 22499--22564 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
22489 AGAAAAAATT
22499 AAGAAAAATAAGAAAAAAGAAGAAAAAG
1 AAGAAAAATAAGAAAAAAGAAGAAAAAG
* * * *
22527 AATAAGAATAAGAAAAAAAACAGAAAAAAA
1 AAGAAAAATAAGAAAAAAGA-AG-AAAAAG
22557 AAGAAAAA
1 AAGAAAAA
22565 AAACAAGAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 17 0.57
29 2 0.07
30 11 0.37
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.05
Consensus pattern (28 bp):
AAGAAAAATAAGAAAAAAGAAGAAAAAG
Found at i:22566 original size:10 final size:10
Alignment explanation
Indices: 22472--22582 Score: 66
Period size: 11 Copynumber: 10.9 Consensus size: 10
22462 CATAAGAGCT
*
22472 AAAAAAAGTTA
1 AAAAAAAG-AA
*
22483 AAAATAAGAA
1 AAAAAAAGAA
*
22493 AAAATTAAG-A
1 AAAA-AAAGAA
*
22503 AAAATAAGAA
1 AAAAAAAGAA
*
22513 AAAAGAAG-A
1 AAAAAAAGAA
* *
22522 AAAAGAA-TA
1 AAAAAAAGAA
* *
22531 AGAATAAGAA
1 AAAAAAAGAA
22541 AAAAAACAGAA
1 AAAAAA-AGAA
22552 AAAAAAAGAAA
1 AAAAAAAG-AA
*
22563 AAAAACAAGAG
1 AAAAA-AAGAA
22574 AAAAAAAGA
1 AAAAAAAGA
22583 TGAGAGATGC
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
9 18 0.21
10 29 0.35
11 34 0.40
12 3 0.04
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:22575 original size:24 final size:21
Alignment explanation
Indices: 22511--22582 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 21
22501 GAAAAATAAG
*
22511 AAAAAAG-AAGAAAA-AGAATA
1 AAAAAAGAAAAAAAACAGAA-A
*
22531 AGAATAAGAAAAAAAACAGAAA
1 A-AAAAAGAAAAAAAACAGAAA
*
22553 AAAAAAGAAAAAAAACAAGAGA
1 AAAAAAGAAAAAAAAC-AGAAA
22575 AAAAAAGA
1 AAAAAAGA
22583 TGAGAGATGC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.02
21 19 0.43
22 20 0.45
23 4 0.09
ACGTcount: A:0.81, C:0.03, G:0.14, T:0.03
Consensus pattern (21 bp):
AAAAAAGAAAAAAAACAGAAA
Found at i:22587 original size:13 final size:12
Alignment explanation
Indices: 22539--22580 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
22529 TAAGAATAAG
*
22539 AAAAAAAACAGA
1 AAAAAAAAGAGA
22551 AAAAAAAAGA-A
1 AAAAAAAAGAGA
22562 AAAAAACAAGAGA
1 AAAAAA-AAGAGA
22575 AAAAAA
1 AAAAAA
22581 GATGAGAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 7 0.26
12 13 0.48
13 7 0.26
ACGTcount: A:0.86, C:0.05, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAGA
Found at i:25459 original size:14 final size:14
Alignment explanation
Indices: 25440--25468 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25430 ATATGCCCAA
25440 GTAAGTCATTGAGG
1 GTAAGTCATTGAGG
25454 GTAAGTCATTGAGG
1 GTAAGTCATTGAGG
25468 G
1 G
25469 ACAGGGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.38, T:0.28
Consensus pattern (14 bp):
GTAAGTCATTGAGG
Found at i:26432 original size:18 final size:18
Alignment explanation
Indices: 26404--26446 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
26394 ACTCTATTGA
26404 TTATCTTGTTTGTACTAAC
1 TTAT-TTGTTTGTACTAAC
26423 TTATTTGTTTGTACTAAC
1 TTATTTGTTTGTACTAAC
*
26441 TCATTT
1 TTATTT
26447 CTTTTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.21, C:0.14, G:0.09, T:0.56
Consensus pattern (18 bp):
TTATTTGTTTGTACTAAC
Found at i:30670 original size:36 final size:36
Alignment explanation
Indices: 30566--30688 Score: 102
Period size: 36 Copynumber: 3.6 Consensus size: 36
30556 TAGAGATAGT
* *
30566 TTTCT-TTAAAACAAATTTTGTCTTTCTTGAGACAG
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
30601 TTTCTCTTGAAAC--A---T-CCATCT-TTGAGATC-G
1 TTTCTCTTGAAACAAATTTTGTC-TCTCTTGAGA-CAG
* *
30631 TTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
30667 TTTCTCTTAAAACAAATATTTG
1 TTTCTCTTGAAACAAAT-TTTG
30689 AGAACGTTTC
Statistics
Matches: 68, Mismatches: 8, Indels: 22
0.69 0.08 0.22
Matches are distributed among these distances:
30 20 0.29
31 4 0.06
32 1 0.01
34 1 0.01
35 10 0.15
36 28 0.41
37 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:30698 original size:28 final size:27
Alignment explanation
Indices: 30658--30715 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
30648 TTTGTCTCTC
*
30658 TTGAGACAGTTTCTCTTAAAACAAATAT
1 TTGAGACAGTTTCCCTTAAAACAAAT-T
* *
30686 TTGAGA-ACGTTTCCCTTGAAACGAATT
1 TTGAGACA-GTTTCCCTTAAAACAAATT
30713 TTG
1 TTG
30716 TCTCTCTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 5 0.19
28 21 0.81
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (27 bp):
TTGAGACAGTTTCCCTTAAAACAAATT
Found at i:30719 original size:64 final size:65
Alignment explanation
Indices: 30574--30772 Score: 310
Period size: 64 Copynumber: 3.1 Consensus size: 65
30564 GTTTTCTTTA
* * *
30574 AAACAAATTTTGTCTTTCTTGAGACAGTTTCTCTTGAAACATCCATCTTTGAGATCGTTTCCCTT
1 AAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAT-CATATTTGAGATCGTTTCCCTT
30639 G
65 G
* * *
30640 AAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTAAAACA-AATATTTGAGAACGTTTCCCTTG
1 AAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATCATATTTGAGATCGTTTCCCTTG
* *
30704 AAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATCATATTTGAGTTTGTTTCCCTTG
1 AAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATCATATTTGAGATCGTTTCCCTTG
30769 AAAC
1 AAAC
30773 ATTATCCCTA
Statistics
Matches: 121, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
64 60 0.50
65 23 0.19
66 38 0.31
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.40
Consensus pattern (65 bp):
AAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATCATATTTGAGATCGTTTCCCTTG
Found at i:31195 original size:3 final size:3
Alignment explanation
Indices: 31189--31239 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
31179 GTCTAAAAAA
*
31189 ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
31236 ATT A
1 ATT A
31240 ACATATATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:36586 original size:19 final size:21
Alignment explanation
Indices: 36549--36591 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
36539 TAACTTTTTC
36549 TTTTATCTTTCATTATTAA-T
1 TTTTATCTTTCATTATTAACT
*
36569 TTTTCTCTTTCATT-TTAACT
1 TTTTATCTTTCATTATTAACT
36589 TTT
1 TTT
36592 ACCTTTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATCTTTCATTATTAACT
Found at i:36597 original size:19 final size:20
Alignment explanation
Indices: 36548--36597 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
36538 TTAACTTTTT
*
36548 CTTTTATCTTTCATTATTAA
1 CTTTTACCTTTCATTATTAA
*
36568 -TTTTTCTCTTTCATT-TTAA
1 CTTTTAC-CTTTCATTATTAA
36587 CTTTTACCTTT
1 CTTTTACCTTT
36598 TCTCTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTTACCTTTCATTATTAA
Found at i:40449 original size:17 final size:16
Alignment explanation
Indices: 40418--40451 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
40408 CACGTGAGGA
40418 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
40434 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
40451 T
1 T
40452 ACTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:43298 original size:92 final size:92
Alignment explanation
Indices: 42972--43317 Score: 317
Period size: 92 Copynumber: 3.8 Consensus size: 92
42962 TCATGCATCT
* * * * *
42972 AAGTTATTAAATTAATAGATGAAAGTTTGAATAGCGTTGAAATATCTAAATTAAACATTTTGATG
1 AAGTTGTTACATTAATAGATGAAAGTTTGAATAGCGTTGAAATGTCTAAACTAAACACTTTGATG
* * * * *
43037 TTCACG-GATAGAGAGGTTAATTTATTC
66 TTTACGACAAAG-GAAGTTAACTTATTC
* * * * * *
43064 AAATTGTTACATTAAT-GAATGAAAATTTGAATAACGTTAAAATGTGTTAACTAAACACTTTGAT
1 AAGTTGTTACATTAATAG-ATGAAAGTTTGAATAGCGTTGAAATGTCTAAACTAAACACTTTGAT
* * *
43128 GTTTACCTACTAAA-GAAGTTATCTTATCC
65 GTTTA-CGAC-AAAGGAAGTTAACTTATTC
* * * * * * * * *
43157 AAGTTGTT---TCAATATATAAAAGTTTAAATAGTGTTGGAATGTCTTAACTAAACACTTTAATA
1 AAGTTGTTACATTAATAGATGAAAGTTTGAATAGCGTTGAAATGTCTAAACTAAACACTTTGATG
* *
43219 TTTACGACAAAGGAATTTAACTTATTG
66 TTTACGACAAAGGAAGTTAACTTATTC
*
43246 AAGTTGTTACATTAATAGATGAAAGTTTGAATAGCGTTGAAATGTCTAAACTAAACACACTTTTA
1 AAGTTGTTACATTAATAGATGAAAGTTTGAATAGCGTTGAAATGTCTAAACT-AA-ACACTTTGA
43311 TGTTTAC
64 TGTTTAC
43318 AGATTAAAAG
Statistics
Matches: 197, Mismatches: 46, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
88 3 0.02
89 22 0.11
90 45 0.23
91 1 0.01
92 89 0.45
93 21 0.11
94 14 0.07
95 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (92 bp):
AAGTTGTTACATTAATAGATGAAAGTTTGAATAGCGTTGAAATGTCTAAACTAAACACTTTGATG
TTTACGACAAAGGAAGTTAACTTATTC
Found at i:47315 original size:140 final size:140
Alignment explanation
Indices: 46945--47327 Score: 504
Period size: 140 Copynumber: 2.7 Consensus size: 140
46935 AAAATGTAGG
* * * *
46945 CTCTAATT-TTAATCGTAA-TCATTTTTATCAAATTATTGAATCGAATAATTGAAATGAAACCTC
1 CTCTAATTATTAATCATAATTGATTTTAATC-AATTATTGAATCGAATAATTAAAATGAAACCTC
* * * * * * *
47008 ATACATTAAGGCGAGGATCAACTCCAAAAATCCACCTAATTTAAGGGACTAAAAGTGAAATTAAT
65 AAACATTAAGGCGATGAACAAAT-CAAATATCCACCTAAGTTAAGGCACTAAAAGTGAAATTAAT
47073 CTAAAGTGAAGA
129 CTAAAGTGAAGA
* * *
47085 CTCTAATTATTAATCCTAATTGA-TTTAATCAATTATTGAATCGAATACTCAAAATGAAACCTCA
1 CTCTAATTATTAATCATAATTGATTTTAATCAATTATTGAATCGAATAATTAAAATGAAACCTCA
* * * *
47149 AGCATTAAGGCAATGAACAAATCAAATATCCACCTAAGTTACGGCACTCAAAGTGAAATTAATCT
66 AACATTAAGGCGATGAACAAATCAAATATCCACCTAAGTTAAGGCACTAAAAGTGAAATTAATCT
47214 AAAGTGGAAGA
131 AAAGT-GAAGA
* *
47225 -TCTAATTATTAATCATACTTGATTTTAATCAATTATTGAATCAAATAATTAAAATGAAACCTCA
1 CTCTAATTATTAATCATAATTGATTTTAATCAATTATTGAATCGAATAATTAAAATGAAACCTCA
* * *
47289 AACATTAAGGCGATGACCAAATCAAATATCTAACTAAGT
66 AACATTAAGGCGATGAACAAATCAAATATCCACCTAAGT
47328 CAAAAAGTTC
Statistics
Matches: 212, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
139 63 0.30
140 132 0.62
141 15 0.07
142 2 0.01
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (140 bp):
CTCTAATTATTAATCATAATTGATTTTAATCAATTATTGAATCGAATAATTAAAATGAAACCTCA
AACATTAAGGCGATGAACAAATCAAATATCCACCTAAGTTAAGGCACTAAAAGTGAAATTAATCT
AAAGTGAAGA
Found at i:49198 original size:15 final size:16
Alignment explanation
Indices: 49158--49212 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
49148 ATAGAAGGTT
*
49158 TAAA-AATAATGAAAG
1 TAAATAATAATGAAAA
49173 TATAA-AATAAT-AAAA
1 TA-AATAATAATGAAAA
49188 TAAATAATAATGAGAAAA
1 TAAATAATAAT--GAAAA
49206 TAAATAA
1 TAAATAA
49213 AGTAAACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 13 0.38
16 8 0.24
18 11 0.32
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (16 bp):
TAAATAATAATGAAAA
Found at i:51551 original size:16 final size:17
Alignment explanation
Indices: 51522--51553 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
51512 TATATAATTA
51522 TATTTTATAAAAATATG
1 TATTTTATAAAAATATG
51539 TATTTTA-AAAAATAT
1 TATTTTATAAAAATAT
51554 TAATAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TATTTTATAAAAATATG
Found at i:52952 original size:17 final size:17
Alignment explanation
Indices: 52930--52969 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
52920 GGAAGTCTAA
*
52930 ATCATTTTCTTGTTTTG
1 ATCATTTTCTTGTTTCG
52947 ATCATTTTCTTGTTTCG
1 ATCATTTTCTTGTTTCG
52964 ATCATT
1 ATCATT
52970 GGGTTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.60
Consensus pattern (17 bp):
ATCATTTTCTTGTTTCG
Found at i:53043 original size:15 final size:16
Alignment explanation
Indices: 53003--53057 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
52993 ATAAAGGGTC
*
53003 TAAA-AATAATGAAAG
1 TAAATAATAATGAAAA
53018 TATAA-AATAAT-AAAA
1 TA-AATAATAATGAAAA
53033 TAAATAATAATGAGAAAA
1 TAAATAATAAT--GAAAA
53051 TAAATAA
1 TAAATAA
53058 AGTAAACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 13 0.38
16 8 0.24
18 11 0.32
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (16 bp):
TAAATAATAATGAAAA
Found at i:62011 original size:15 final size:16
Alignment explanation
Indices: 61979--62014 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
61969 AACTATTCGG
61979 AGAAAACATGAGAAAA
1 AGAAAACATGAGAAAA
*
61995 AGAAAACATTA-AAAA
1 AGAAAACATGAGAAAA
62010 AGAAA
1 AGAAA
62015 GCAAGTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.72, C:0.06, G:0.14, T:0.08
Consensus pattern (16 bp):
AGAAAACATGAGAAAA
Found at i:63512 original size:325 final size:325
Alignment explanation
Indices: 62922--63579 Score: 1255
Period size: 325 Copynumber: 2.0 Consensus size: 325
62912 TTTATGTCTC
*
62922 AAACGATTTTAGTATTATTTTATTATACCTTAGAAGTAAAGATTGCATTATATTACCATATGAAT
1 AAACGATTTTAGTATTATTTTATTATACCTTAGAAGTAAAGATTACATTATATTACCATATGAAT
*
62987 GTTTCTGGTTGATGTTTTATAACTCTTATGTATTTATGTATGTATTTTATTCTTTTAGAATCAAT
66 GTTTCTGGTTGATGTTTTATAACTCTTACGTATTTATGTATGTATTTTATTCTTTTAGAATCAAT
63052 GTTATGAAGGATGGTGAAATACTTATTTTACTTGTTAATCTTTTATATATTGCTTGAATGTTTTT
131 GTTATGAAGGATGGTGAAATACTTATTTTACTTGTTAATCTTTTATATATTGCTTGAATGTTTTT
63117 CAAGAACATCGATTTGTAAAATAAGCGTGGAAAACATCACTTGGTTGAAGTGATGCGATCCGATA
196 CAAGAACATCGATTTGTAAAATAAGCGTGGAAAACATCACTTGGTTGAAGTGATGCGATCCGATA
63182 CGACATTTTAATGAAATG-GAAACTTGAAATAAATATAGTTTATTTTATTAATTAATTTTTTATT
261 CGACATTTTAATGAAATGAG-AACTTGAAATAAATATAGTTTATTTTATTAATTAATTTTTTATT
63246 T
325 T
63247 AAACGATTTTAGTATTATTTTATTATACCTTAGAAGTAAAGATTACATTATATTACCATATGAAT
1 AAACGATTTTAGTATTATTTTATTATACCTTAGAAGTAAAGATTACATTATATTACCATATGAAT
* *
63312 GTTTTTGGTTGATGTTTTATGACTCTTACGTATTTATGTATGTATTTTATTCTTTTAGAATCAAT
66 GTTTCTGGTTGATGTTTTATAACTCTTACGTATTTATGTATGTATTTTATTCTTTTAGAATCAAT
63377 GTTATGAAGGATGGTGAAATACTTATTTTACTTGTTAATCTTTTATATATTGCTTGAATGTTTTT
131 GTTATGAAGGATGGTGAAATACTTATTTTACTTGTTAATCTTTTATATATTGCTTGAATGTTTTT
63442 CAAGAACATCGATTTGTAAAATAAGCGTGGAAAACATCACTTGGTTGAAGTGATGCGATCCGATA
196 CAAGAACATCGATTTGTAAAATAAGCGTGGAAAACATCACTTGGTTGAAGTGATGCGATCCGATA
63507 CGACATTTTAATGAAATGAGAACTTGAAATAAATATAGTTTATTTTATTAATTAATTTTTTATTT
261 CGACATTTTAATGAAATGAGAACTTGAAATAAATATAGTTTATTTTATTAATTAATTTTTTATTT
*
63572 AAATGATT
1 AAACGATT
63580 CAATGTTTTT
Statistics
Matches: 327, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
325 326 1.00
326 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.44
Consensus pattern (325 bp):
AAACGATTTTAGTATTATTTTATTATACCTTAGAAGTAAAGATTACATTATATTACCATATGAAT
GTTTCTGGTTGATGTTTTATAACTCTTACGTATTTATGTATGTATTTTATTCTTTTAGAATCAAT
GTTATGAAGGATGGTGAAATACTTATTTTACTTGTTAATCTTTTATATATTGCTTGAATGTTTTT
CAAGAACATCGATTTGTAAAATAAGCGTGGAAAACATCACTTGGTTGAAGTGATGCGATCCGATA
CGACATTTTAATGAAATGAGAACTTGAAATAAATATAGTTTATTTTATTAATTAATTTTTTATTT
Found at i:64627 original size:20 final size:18
Alignment explanation
Indices: 64602--64658 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 18
64592 TAAATTAAAG
64602 AAATAAATCAAATAAAATAA
1 AAATAAA-CAAATAAAA-AA
*
64622 AAATAAAAGAAATAAAAAA
1 AAAT-AAACAAATAAAAAA
64641 AACATAAACAAA-AAAAAA
1 AA-ATAAACAAATAAAAAA
64659 GAAAAAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 6 0.18
19 10 0.30
20 14 0.42
21 3 0.09
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (18 bp):
AAATAAACAAATAAAAAA
Found at i:64636 original size:15 final size:14
Alignment explanation
Indices: 64598--64682 Score: 68
Period size: 15 Copynumber: 6.1 Consensus size: 14
64588 TAACTAAATT
*
64598 AAAGAAATAAATCAA
1 AAAGAAATAAA-AAA
*
64613 ATA-AAATAAAAATA
1 AAAGAAATAAAAA-A
64627 AAAGAAATAAAAAA
1 AAAGAAATAAAAAA
* *
64641 AACATAAACAAAAAA
1 AA-AGAAATAAAAAA
*
64656 AAAG-AA-AAAAGA
1 AAAGAAATAAAAAA
*
64668 AAAGAAACAAAAAA
1 AAAGAAATAAAAAA
64682 A
1 A
64683 GGGGAAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
12 9 0.16
13 5 0.09
14 20 0.35
15 23 0.40
ACGTcount: A:0.81, C:0.05, G:0.06, T:0.08
Consensus pattern (14 bp):
AAAGAAATAAAAAA
Found at i:64665 original size:12 final size:12
Alignment explanation
Indices: 64650--64683 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
64640 AAACATAAAC
64650 AAAAAAAAAGAA
1 AAAAAAAAAGAA
*
64662 AAAAGAAAAGAA
1 AAAAAAAAAGAA
*
64674 ACAAAAAAAG
1 AAAAAAAAAG
64684 GGGAAAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:64670 original size:16 final size:16
Alignment explanation
Indices: 64635--64681 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
64625 TAAAAGAAAT
*
64635 AAAAAAAACATAAACA-
1 AAAAAAAACA-AAAAAG
*
64651 AAAAAAAAGAAAAAAG
1 AAAAAAAACAAAAAAG
*
64667 AAAAGAAACAAAAAA
1 AAAAAAAACAAAAAA
64682 AGGGGAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.85, C:0.06, G:0.06, T:0.02
Consensus pattern (16 bp):
AAAAAAAACAAAAAAG
Found at i:64783 original size:64 final size:62
Alignment explanation
Indices: 64656--64832 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
64646 AAACAAAAAA
* * * *
64656 AAAGAAAAAAGAAAAGAAACAAAAAAAGGGGAAAATAAT--AAAAATATATAAAAATGTTAGGT
1 AAAGAAAAAATAATA-AAACAAAAAAA-GAGAAAATAATAAAAAAATATATAAAAACGTTAGGT
** *
64718 AAA-AATCAATAA-AAAACAAAAAAAGAGCACAATAATAAAAAATATATAAATAAAAACGTTAGG
1 AAAGAAAAAATAATAAAACAAAAAAAGAG-AAAATAATAAAAAA-ATAT--ATAAAAACGTTAGG
64781 T
62 T
64782 AAAGAAAAAATAATAAAA-AACAAAAAGA-AAAATAATAAAAAAGAATATATA
1 AAAGAAAAAATAATAAAACAA-AAAAAGAGAAAATAAT-AAAAA-AATATATA
64833 TATATATATA
Statistics
Matches: 95, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
58 2 0.02
59 18 0.19
60 1 0.01
61 10 0.11
62 7 0.07
63 3 0.03
64 24 0.25
65 18 0.19
66 12 0.13
ACGTcount: A:0.71, C:0.04, G:0.10, T:0.15
Consensus pattern (62 bp):
AAAGAAAAAATAATAAAACAAAAAAAGAGAAAATAATAAAAAAATATATAAAAACGTTAGGT
Found at i:68053 original size:82 final size:82
Alignment explanation
Indices: 67946--68108 Score: 317
Period size: 82 Copynumber: 2.0 Consensus size: 82
67936 ATACCGACAT
67946 ATGATTTCTTTCTTCAAGAACTTACAAATAGTGGACTGAGTGACACTGGCATATGATGCAGCCTC
1 ATGATTTCTTTCTTCAAGAACTTACAAATAGTGGACTGAGTGACACTGGCATATGATGCAGCCTC
68011 TACCCATGTTGTGAAAC
66 TACCCATGTTGTGAAAC
68028 ATGATTTCTTTCTTCAAGAACTTACAAATAGTGGACTGAGTGACACTGGCATATGATGCAGCCTC
1 ATGATTTCTTTCTTCAAGAACTTACAAATAGTGGACTGAGTGACACTGGCATATGATGCAGCCTC
*
68093 TACCCATGTTTTGAAA
66 TACCCATGTTGTGAAA
68109 TAGTCGATTG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (82 bp):
ATGATTTCTTTCTTCAAGAACTTACAAATAGTGGACTGAGTGACACTGGCATATGATGCAGCCTC
TACCCATGTTGTGAAAC
Found at i:77649 original size:29 final size:30
Alignment explanation
Indices: 77604--77676 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 30
77594 TAACTAAATT
* * * * *
77604 AAAGAAACAAATCAAATAATATAAA-AAGA
1 AAAGAAAAAAATAAAATAACAGAAACAAAA
*
77633 AAATAAAAAAATAAAATAACAGAAACAAAA
1 AAAGAAAAAAATAAAATAACAGAAACAAAA
77663 AAAGAAAAAAATAA
1 AAAGAAAAAAATAA
77677 TAAAAAGAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 20 0.56
30 16 0.44
ACGTcount: A:0.78, C:0.05, G:0.05, T:0.11
Consensus pattern (30 bp):
AAAGAAAAAAATAAAATAACAGAAACAAAA
Found at i:77681 original size:17 final size:17
Alignment explanation
Indices: 77661--77717 Score: 71
Period size: 17 Copynumber: 3.2 Consensus size: 17
77651 ACAGAAACAA
77661 AAAAAGAAAAAAATAAT
1 AAAAAGAAAAAAATAAT
77678 AAAAAGAACATAAACATAA-
1 AAAAAGAA-A-AAA-ATAAT
*
77697 AAAAAGGAAAAAATAAT
1 AAAAAGAAAAAAATAAT
77714 AAAA
1 AAAA
77718 TATATAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
16 4 0.11
17 15 0.43
18 2 0.06
19 10 0.29
20 4 0.11
ACGTcount: A:0.79, C:0.04, G:0.07, T:0.11
Consensus pattern (17 bp):
AAAAAGAAAAAAATAAT
Found at i:77687 original size:28 final size:30
Alignment explanation
Indices: 77632--77701 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
77622 ATATAAAAAG
77632 AAAATAAAAAAATAAAATAACAGAAACAAA
1 AAAATAAAAAAATAAAATAACAGAAACAAA
* *
77662 AAAAGAAAAAAATAATAA-AA-AG-AACATA
1 AAAATAAAAAAATAA-AATAACAGAAACAAA
*
77690 AACATAAAAAAA
1 AAAATAAAAAAA
77702 GGAAAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 15 0.43
29 2 0.06
30 16 0.46
31 2 0.06
ACGTcount: A:0.80, C:0.06, G:0.04, T:0.10
Consensus pattern (30 bp):
AAAATAAAAAAATAAAATAACAGAAACAAA
Found at i:77693 original size:34 final size:35
Alignment explanation
Indices: 77626--77717 Score: 107
Period size: 36 Copynumber: 2.6 Consensus size: 35
77616 CAAATAATAT
* *
77626 AAAAAGAAAATAAA-AAAATAAAATAACAGAAAC-AA
1 AAAAAGAAAA-AAATAATA-AAAAGAACAGAAACAAA
*
77661 AAAAAGAAAAAAATAATAAAAAGAACATAAACATAA
1 AAAAAGAAAAAAATAATAAAAAGAACAGAAACA-AA
*
77697 AAAAAGGAAAAAATAATAAAA
1 AAAAAGAAAAAAATAATAAAA
77718 TATATAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
34 15 0.30
35 13 0.26
36 22 0.44
ACGTcount: A:0.79, C:0.04, G:0.07, T:0.10
Consensus pattern (35 bp):
AAAAAGAAAAAAATAATAAAAAGAACAGAAACAAA
Found at i:77781 original size:2 final size:2
Alignment explanation
Indices: 77776--77808 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
77766 AAAGAAAAAA
77776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77809 AACGTTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77877 original size:14 final size:13
Alignment explanation
Indices: 77858--77903 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
77848 AATAATATAT
*
77858 ATATATATAAATAA
1 ATATAT-TAATTAA
77872 ATATATTAGATTAA
1 ATATATTA-ATTAA
*
77886 ATAAATTAATTAA
1 ATATATTAATTAA
77899 ATATA
1 ATATA
77904 GAAGAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (13 bp):
ATATATTAATTAA
Found at i:77877 original size:18 final size:18
Alignment explanation
Indices: 77847--77891 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
77837 CAAAAAAGAA
*
77847 AAAT-AATATATATATATAT
1 AAATAAATATAT-TAGAT-T
77866 AAATAAATATATTAGATT
1 AAATAAATATATTAGATT
77884 AAATAAAT
1 AAATAAAT
77892 TAATTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 8 0.33
20 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AAATAAATATATTAGATT
Found at i:80012 original size:16 final size:16
Alignment explanation
Indices: 79993--80044 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
79983 TTAGAGTGAC
79993 TGAATTAAGAGTAATT
1 TGAATTAAGAGTAATT
* *
80009 TGAAAGTT-AGAGTGA-C
1 TG-AA-TTAAGAGTAATT
80025 TGAATTAAGAGTAATT
1 TGAATTAAGAGTAATT
80041 TGAA
1 TGAA
80045 AGTTAAGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 2 0.07
15 8 0.29
16 8 0.29
17 8 0.29
18 2 0.07
ACGTcount: A:0.42, C:0.02, G:0.23, T:0.33
Consensus pattern (16 bp):
TGAATTAAGAGTAATT
Found at i:80014 original size:32 final size:32
Alignment explanation
Indices: 79973--80049 Score: 154
Period size: 32 Copynumber: 2.4 Consensus size: 32
79963 ATAAAAATTA
79973 AATTTGAAAGTTAGAGTGACTGAATTAAGAGT
1 AATTTGAAAGTTAGAGTGACTGAATTAAGAGT
80005 AATTTGAAAGTTAGAGTGACTGAATTAAGAGT
1 AATTTGAAAGTTAGAGTGACTGAATTAAGAGT
80037 AATTTGAAAGTTA
1 AATTTGAAAGTTA
80050 AGCAATTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (32 bp):
AATTTGAAAGTTAGAGTGACTGAATTAAGAGT
Found at i:87516 original size:14 final size:14
Alignment explanation
Indices: 87493--87522 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
87483 TTACATTGAG
87493 TTTCTCAATAAAAC
1 TTTCTCAATAAAAC
*
87507 TTTCTTAATAAAAC
1 TTTCTCAATAAAAC
87521 TT
1 TT
87523 AAAAGATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTCTCAATAAAAC
Found at i:91062 original size:34 final size:35
Alignment explanation
Indices: 91017--91083 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
91007 ATATTATTTG
*
91017 ATTATTTTGGAATTTAGGGTTTAGAATGTAATTGA
1 ATTATTTTGGAATTTAGGGTTTAGAATGAAATTGA
*
91052 ATTA-TTTGGAATTTGGGGTTTAGAATGAAATT
1 ATTATTTTGGAATTTAGGGTTTAGAATGAAATT
91084 AAGGATTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.45
Consensus pattern (35 bp):
ATTATTTTGGAATTTAGGGTTTAGAATGAAATTGA
Found at i:91881 original size:17 final size:16
Alignment explanation
Indices: 91855--91893 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
91845 AATTTAAATG
* *
91855 ATAAAAATTATTTTGA
1 ATAAAAATTAATTTAA
91871 ATAATAAATTAATTTAA
1 ATAA-AAATTAATTTAA
91888 ATAAAA
1 ATAAAA
91894 TTGGTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
ATAAAAATTAATTTAA
Done.