genome.fa.s3216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003216.1 Hibiscus syriacus cultivar Beakdansim tig00006770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127059

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365--1432	30	2.3	30	86	0	91	44	19	4	32	1.70
7977--8023	10	5.0	10	77	15	55	78	0	10	10	0.96
7981--8018	17	2.2	17	95	0	67	81	0	10	7	0.87
7977--8033	27	2.1	28	86	3	80	77	0	10	12	1.00
9495--9574	3	26.7	3	86	5	108	31	3	0	65	1.11
11436--11514	2	40.0	2	97	2	151	49	0	0	50	1.00
11639--11676	20	1.9	20	94	0	67	15	18	5	60	1.53
15076--15187	31	3.7	30	77	5	100	43	8	10	36	1.71
15549--15639	17	4.9	18	69	14	60	51	3	3	41	1.34
15621--15721	46	2.1	49	82	8	120	49	0	0	48	1.14
15922--15964	22	2.0	22	86	9	61	44	23	2	30	1.66
17218--17242	11	2.3	11	100	0	50	24	0	0	76	0.80
20344--20413	14	5.0	14	89	0	113	52	11	20	15	1.73
25120--25161	14	3.0	14	92	0	75	52	11	21	14	1.73
53743--53778	18	2.0	18	94	0	63	13	19	50	16	1.79
53737--53765	13	2.2	13	100	0	58	13	20	48	17	1.81
53791--53841	9	5.2	10	79	11	61	37	27	19	15	1.92
53798--53846	10	4.8	11	76	16	52	36	22	20	20	1.95
60873--60966	29	3.3	29	82	7	95	42	25	7	24	1.80
60985--61015	13	2.4	13	94	0	53	16	19	48	16	1.81
61035--61082	10	4.8	10	85	10	71	37	27	20	14	1.92
65533--65588	20	2.8	20	91	0	85	41	19	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66208--66238	15	2.1	15	93	0	53	35	16	25	22	1.94
68002--68034	2	16.5	2	87	12	50	45	3	0	51	1.16
68691--68722	2	16.0	2	100	0	64	50	0	0	50	1.00
69955--70053	49	2.0	49	96	1	182	44	11	9	35	1.72
70952--71020	29	2.4	29	95	0	120	31	26	15	26	1.96
77365--77470	48	2.2	48	87	0	149	46	17	2	33	1.63
79863--79888	11	2.4	11	100	0	52	19	0	0	80	0.71
80270--80367	41	2.4	41	96	0	187	18	21	24	35	1.95
80295--80387	20	4.6	20	81	2	123	13	23	23	38	1.91
80509--80545	6	6.5	6	96	3	60	29	54	16	0	1.43
81477--81563	19	4.5	19	77	11	104	40	19	20	19	1.92
81477--81624	59	2.5	60	87	8	212	40	20	21	17	1.91
81579--81627	20	2.5	20	100	0	98	42	22	26	8	1.81
82578--82631	20	2.7	20	91	5	83	24	24	16	35	1.95
82597--82734	40	3.4	41	82	6	147	30	23	12	34	1.91
82615--82734	40	3.0	40	83	3	152	30	23	11	34	1.90
82626--82754	20	6.5	19	73	13	91	29	22	13	34	1.92
83508--83541	12	2.8	12	90	0	50	55	29	0	14	1.40
86114--86160	20	2.3	20	85	0	76	23	25	19	31	1.98
86268--86400	63	2.1	64	90	1	205	53	18	0	27	1.50
87752--87857	21	5.0	21	83	4	133	25	19	33	20	1.97
87752--87857	42	2.5	42	87	0	158	25	19	33	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89961--90004	20	2.2	20	95	0	79	11	18	22	47	1.80
89972--90015	20	2.2	20	83	0	52	13	15	20	50	1.78
90344--90400	22	2.6	22	85	0	78	17	17	42	22	1.89
93486--93520	18	1.9	18	88	11	54	57	8	0	34	1.29
95044--95094	18	2.8	18	78	0	57	27	25	21	25	1.99
99365--99401	19	1.9	19	88	0	56	13	27	35	24	1.93
103246--103285	21	1.9	21	90	10	64	32	10	5	52	1.56
105612--105649	20	1.9	20	84	10	51	34	10	0	55	1.34
110737--110774	20	1.9	20	84	10	51	34	13	0	52	1.40
117350--117455	30	3.2	30	65	23	77	14	14	21	50	1.78
117355--117461	36	3.0	36	61	28	84	13	14	19	53	1.73
118370--118404	2	18.0	2	88	5	54	45	0	0	54	0.99
120547--120581	2	18.0	2	94	5	63	48	0	0	51	1.00
121152--121194	21	2.1	21	95	4	79	53	13	0	32	1.41
121172--121548	32	12.7	31	67	26	187	52	11	0	35	1.38
121141--121543	80	5.0	82	72	18	298	53	11	0	34	1.38
121198--121356	28	5.9	27	68	21	77	54	8	0	37	1.32
121141--121543	85	5.0	81	69	16	293	53	11	0	34	1.38
121287--121328	22	2.0	21	95	4	75	52	9	0	38	1.34
121289--121336	22	2.2	22	85	7	62	56	10	0	33	1.34
121209--121360	53	2.9	53	90	4	247	54	9	0	35	1.34
121172--121409	53	4.4	55	82	10	230	52	12	0	34	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121342--121416	22	3.2	23	75	17	82	54	17	0	28	1.43
121420--121462	22	2.0	22	95	0	77	51	11	0	37	1.39
121144--121559	54	7.8	54	76	15	366	52	11	0	35	1.37
121422--121470	22	2.2	22	85	3	62	55	12	0	32	1.37
121474--121516	22	2.0	22	100	0	86	51	13	0	34	1.42
121144--121516	133	2.8	132	88	7	546	53	11	0	35	1.38
121476--121524	22	2.2	22	88	3	71	55	14	0	30	1.40
121495--121605	32	3.4	32	75	13	93	50	5	0	44	1.25
121547--121613	15	4.5	15	92	1	109	47	0	0	52	1.00
121568--121666	15	5.9	17	77	16	66	50	3	0	46	1.16

Tables:   1

The End!