genome.fa.s3217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003217.1 Hibiscus syriacus cultivar Beakdansim tig00006778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150096

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3278--3333	27	2.0	28	86	10	80	62	5	5	26	1.39
4384--4911	175	3.0	175	91	5	843	42	3	9	44	1.54
4384--4915	179	3.0	178	92	4	848	41	3	9	44	1.54
5357--5388	2	16.0	2	93	0	55	53	0	0	46	1.00
11390--11441	23	2.3	23	86	0	77	13	17	13	55	1.69
13474--13567	34	2.8	34	78	13	95	43	4	6	45	1.49
14134--14192	18	3.2	19	79	9	59	50	1	1	45	1.21
16006--16064	30	2.0	30	89	0	91	25	13	1	59	1.44
18345--18445	29	3.3	30	79	5	96	29	0	14	54	1.47
28490--28555	21	3.1	21	86	0	96	31	15	22	30	1.95
38804--38832	14	2.1	14	100	0	58	41	0	6	51	1.28
41747--41771	11	2.3	11	100	0	50	16	52	16	16	1.76
45062--45093	15	2.1	16	94	5	57	6	25	18	50	1.70
45844--45877	16	2.1	16	94	0	59	32	26	8	32	1.87
47489--47531	3	14.3	3	90	9	70	30	0	0	69	0.88
47489--47531	19	2.4	19	92	7	72	30	0	0	69	0.88
47599--47673	25	3.0	25	100	0	150	36	20	16	28	1.93
51625--51686	32	2.0	32	96	3	117	14	14	9	61	1.57
54094--54171	26	3.2	25	67	22	76	24	23	10	42	1.85
54109--54183	20	3.5	20	70	20	62	26	25	10	37	1.89
56008--56039	4	8.5	4	86	13	50	50	25	0	25	1.50
56008--56034	14	1.9	14	100	0	54	51	25	0	22	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56364--56472	38	2.9	36	82	9	121	33	19	13	33	1.91
56394--56562	91	1.8	94	84	6	238	31	17	10	40	1.84
56647--56705	30	2.0	30	96	0	109	22	22	13	42	1.88
56671--56801	36	3.7	36	82	5	142	32	21	12	34	1.90
57060--57148	29	3.1	29	88	8	128	30	12	12	44	1.79
57228--57252	1	25.0	1	100	0	50	100	0	0	0	0.00
57273--57466	67	3.0	66	84	8	247	30	11	12	44	1.78
58051--58506	40	10.7	41	71	17	263	23	31	19	25	1.98
58084--58578	46	11.4	45	73	14	319	24	30	19	25	1.98
58054--58581	129	4.1	129	94	0	871	24	30	19	25	1.98
58749--58788	3	13.3	3	89	10	64	30	0	0	70	0.88
58753--58796	22	2.0	22	91	8	72	29	0	2	68	1.02
58856--58930	25	3.0	25	100	0	150	36	20	16	28	1.93
66240--66307	22	2.9	23	76	19	61	41	0	1	57	1.08
67527--67590	26	2.5	25	78	14	67	53	1	0	45	1.10
77503--77548	21	2.2	21	84	0	56	43	28	8	19	1.80
80728--80772	14	3.0	15	83	6	56	26	2	4	66	1.22
81780--81855	26	2.9	26	84	5	91	67	9	2	21	1.31
99192--99267	23	3.3	23	98	1	145	53	0	3	42	1.19
99481--99518	20	1.9	20	88	0	58	26	26	5	42	1.76
115122--115192	5	14.2	5	93	0	124	56	0	2	40	1.14
116948--116981	17	2.0	17	88	11	52	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118198--118290	21	4.5	21	78	4	100	39	18	24	17	1.91
118198--118290	41	2.3	41	100	0	186	39	18	24	17	1.91
118328--118379	20	2.6	20	93	0	86	26	28	19	25	1.98
118934--119064	19	7.1	19	78	11	137	11	20	22	45	1.83
121068--121190	42	2.9	42	80	2	122	22	36	17	22	1.95
121124--121190	21	3.2	21	66	6	55	23	35	20	19	1.95
122497--122532	14	2.6	14	95	0	63	30	0	25	44	1.54
122660--122770	33	3.4	32	84	9	152	16	23	18	41	1.90
122677--122770	19	5.5	19	67	23	82	17	21	19	42	1.89
123516--123560	18	2.5	18	85	0	63	11	15	46	26	1.79
125094--125159	22	3.0	22	97	0	123	18	15	45	21	1.85
125347--125398	20	2.6	20	93	0	86	25	19	28	26	1.98
125409--125501	20	4.6	20	75	4	87	18	24	17	39	1.91
125409--125501	41	2.3	41	96	0	177	18	24	17	39	1.91
126616--126686	23	3.1	23	83	4	90	45	22	12	19	1.84
130128--130236	46	2.4	46	93	0	191	33	8	18	39	1.80
131135--131179	4	11.2	4	100	0	90	24	0	0	75	0.80
134368--134400	17	1.9	17	100	0	66	45	0	0	54	0.99
141307--141347	3	13.7	3	100	0	82	34	0	0	65	0.93
142862--142947	44	2.0	44	92	0	145	48	4	0	46	1.22
142912--142979	27	2.6	27	79	6	68	47	0	1	51	1.09
142981--143081	54	1.9	51	84	6	130	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143033--143086	22	2.4	22	80	17	58	48	0	0	51	1.00
144459--144499	17	2.4	18	92	8	68	17	51	21	9	1.74
144533--144600	29	2.3	29	80	5	75	32	5	22	39	1.78
145285--145353	23	2.9	24	78	4	77	24	11	17	46	1.81

Tables:   1

The End!