genome.fa.s3219.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003219.1 Hibiscus syriacus cultivar Beakdansim tig00006780_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51539

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910--2181	20	13.6	20	74	10	191	38	24	18	19	1.93
1971--2178	41	5.2	40	89	2	296	37	24	18	19	1.94
1971--2178	79	2.6	81	86	4	298	37	24	18	19	1.94
2732--2809	20	4.0	20	73	6	70	48	14	21	15	1.80
2747--2863	33	3.4	33	83	7	108	47	17	20	14	1.83
2775--2865	33	2.8	33	84	0	110	46	19	19	14	1.84
2878--2967	19	4.9	19	74	15	91	12	22	20	45	1.83
2870--2967	33	2.8	33	89	9	133	12	22	19	45	1.83
2904--2965	20	3.2	20	81	4	90	12	22	17	46	1.82
4593--4853	90	2.9	92	90	4	404	21	12	18	47	1.81
6498--6532	13	2.6	14	90	4	54	31	0	22	45	1.53
6638--6717	19	4.5	19	72	19	57	45	21	20	13	1.85
6686--6726	19	2.2	19	90	0	64	56	24	9	9	1.62
6731--6877	33	4.3	33	80	10	159	12	23	21	42	1.86
6766--6864	19	5.4	19	76	18	93	15	21	20	43	1.88
6822--6849	14	2.0	14	100	0	56	14	21	21	42	1.88
6729--6863	72	1.9	71	89	1	207	12	23	21	42	1.87
6870--6943	20	3.7	20	67	16	53	25	17	24	32	1.97
9392--9436	23	2.0	23	95	0	81	33	22	22	22	1.97
10271--10500	20	11.4	20	84	5	241	20	18	20	40	1.92
10266--10541	40	6.8	41	83	7	255	20	18	21	39	1.93
10528--10580	20	2.7	20	82	5	63	16	18	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10568--10647	21	3.8	21	73	6	72	22	21	22	33	1.97
10548--10641	42	2.3	42	78	9	104	23	21	20	35	1.96
13777--13982	84	2.3	91	72	17	207	51	15	5	26	1.66
17889--18032	63	2.2	64	83	2	173	22	8	18	50	1.73
18539--18588	23	2.1	24	88	3	75	18	12	44	26	1.84
19054--19093	3	13.7	3	89	5	64	37	0	0	62	0.95
20424--20456	15	2.2	16	89	10	52	27	0	3	69	1.03
22646--22733	8	10.5	8	75	14	72	15	38	26	19	1.92
22637--22691	17	3.2	17	97	2	101	18	49	21	10	1.78
22683--22714	7	4.4	7	92	7	55	12	34	28	25	1.92
22680--22723	15	2.8	15	93	6	70	13	34	29	22	1.93
25187--25269	23	3.6	23	82	8	96	24	16	20	38	1.93
25202--25276	24	3.2	24	88	1	116	25	17	21	36	1.95
27464--27559	8	11.5	8	74	12	70	16	37	26	19	1.93
27455--27509	17	3.2	17	94	2	92	20	49	21	9	1.76
27501--27540	7	5.4	7	85	11	53	15	32	27	25	1.95
27501--27549	15	3.1	15	88	5	62	14	32	28	24	1.94
30017--30099	23	3.6	23	80	8	87	24	16	19	39	1.91
30032--30106	24	3.2	24	86	1	107	25	17	20	37	1.94
31947--31989	22	2.0	22	95	0	77	51	11	2	34	1.51
31949--31997	22	2.2	22	85	3	62	55	12	2	30	1.48
32005--32078	22	3.2	22	69	23	62	52	17	0	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31937--32429	134	3.6	134	93	2	792	52	13	0	33	1.42
32049--32624	32	20.6	32	70	27	444	52	13	0	34	1.41
32083--32131	22	2.2	22	85	3	62	57	12	0	30	1.36
32137--32211	22	3.2	23	75	17	82	54	17	0	28	1.43
32215--32257	22	2.0	22	95	0	77	51	16	0	32	1.45
32217--32265	22	2.2	22	85	3	62	55	16	0	28	1.42
32268--32311	22	2.0	22	100	0	88	54	13	0	31	1.39
31937--32343	54	7.6	54	82	9	381	52	13	0	33	1.43
32355--32397	22	2.0	22	95	0	77	53	11	0	34	1.37
32323--32592	54	5.0	54	94	0	477	51	13	0	34	1.41
31947--32592	108	6.0	107	75	11	502	52	13	0	33	1.43
32417--32459	22	2.0	22	85	0	59	51	18	0	30	1.47
32465--32513	22	2.2	22	88	3	71	55	14	0	30	1.40
32517--32559	22	2.0	22	100	0	86	51	13	0	34	1.42
32519--32567	22	2.2	22	88	3	71	55	14	0	30	1.40
35742--35770	12	2.4	12	100	0	58	65	10	10	13	1.47
36554--36597	21	2.0	24	82	13	58	38	6	9	45	1.63
38185--38358	45	3.9	45	92	0	287	39	6	22	31	1.79
38256--38329	22	3.2	24	63	18	66	45	4	17	32	1.67
45947--45972	3	8.7	3	100	0	52	34	0	0	65	0.93
50904--50943	18	2.3	18	95	4	73	50	10	10	30	1.69

Tables:   1

The End!