genome.fa.s3220.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003220.1 Hibiscus syriacus cultivar Beakdansim tig00006782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155937

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4378--4409	2	16.0	2	100	0	64	50	0	0	50	1.00
9236--9296	30	2.0	30	93	0	104	13	21	29	36	1.91
11648--11725	24	3.2	24	62	16	61	34	11	5	48	1.61
11633--11733	49	2.1	49	98	0	193	30	10	6	51	1.63
13213--13237	9	2.8	9	100	0	50	44	0	56	0	0.99
14082--14124	2	21.5	2	100	0	86	51	0	0	48	1.00
17193--17221	14	2.0	15	93	6	51	17	20	0	62	1.33
24119--24171	19	2.7	19	82	2	61	32	15	13	39	1.85
28678--28791	59	1.9	59	80	7	133	43	7	17	30	1.77
28901--29010	31	3.5	31	94	0	193	19	19	20	40	1.91
28901--29025	31	4.0	31	89	6	173	20	18	21	39	1.93
30067--30113	13	3.5	13	80	11	51	29	2	14	53	1.53
30267--30299	3	11.3	3	87	6	50	39	0	0	60	0.97
38799--38886	1	88.0	1	94	0	149	96	0	1	2	0.25
40164--40443	55	5.1	55	92	1	483	28	15	28	27	1.96
40164--40446	108	2.6	110	93	2	507	28	14	28	28	1.96
40439--40887	52	8.6	52	93	0	736	28	16	25	30	1.96
41141--41173	3	11.3	3	87	6	50	39	0	0	60	0.97
44222--44332	36	3.2	35	82	13	149	32	33	18	16	1.93
44221--44335	31	3.5	31	82	11	140	32	33	18	15	1.92
47871--47899	2	15.0	2	92	7	51	48	0	0	51	1.00
49534--49597	23	2.7	23	83	11	78	28	25	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49613--49933	103	3.1	103	95	0	588	37	24	12	25	1.90
50415--50453	20	2.0	20	89	0	60	10	33	33	23	1.88
51694--51743	18	2.6	19	81	6	57	30	28	14	28	1.95
54870--55228	178	2.0	178	91	0	574	27	12	16	43	1.84
56721--56855	60	2.3	59	80	3	155	34	13	15	37	1.87
57418--57495	14	5.4	14	73	14	61	74	1	6	17	1.10
57692--57799	13	8.3	13	68	24	52	62	1	2	32	1.20
57756--57798	18	2.5	17	81	7	52	65	2	4	27	1.25
57680--57806	62	2.1	59	83	14	152	60	2	2	34	1.22
58149--58253	37	2.8	37	85	0	138	29	14	14	41	1.85
58796--59351	105	5.3	105	86	4	696	22	17	25	34	1.96
59520--59595	36	2.1	36	90	0	116	40	15	21	22	1.90
59495--59813	105	3.1	104	90	2	500	36	11	20	31	1.89
59947--60061	36	3.2	36	72	4	108	44	10	17	27	1.81
59900--60061	72	2.2	75	85	8	217	40	12	18	27	1.87
61201--61737	183	2.9	183	95	0	959	30	21	20	27	1.98
65241--65278	19	2.0	20	89	5	60	68	0	23	7	1.16
66875--66979	37	2.8	37	83	0	129	30	13	14	41	1.84
80542--80582	4	10.2	4	100	0	82	0	24	51	24	1.49
80592--80658	25	2.7	27	78	17	74	47	2	5	43	1.43
81001--81032	17	1.9	17	93	6	57	62	3	18	15	1.45
81286--81339	18	3.1	18	81	10	58	42	5	22	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81912--81974	32	2.0	32	90	6	101	44	31	7	15	1.76
92961--92994	17	2.1	17	94	5	61	38	0	17	44	1.49
102579--102989	207	2.0	202	95	2	741	34	21	13	30	1.92
103909--104350	220	2.0	221	95	0	796	34	22	16	27	1.95
105728--105767	16	2.4	16	87	4	53	70	0	5	25	1.08
105985--106029	19	2.3	20	81	14	58	57	4	17	20	1.56
106293--106390	5	18.8	5	71	18	51	70	2	4	23	1.15
106288--106345	30	2.0	29	86	3	80	72	0	6	20	1.07
107482--107522	11	3.4	12	83	10	57	78	0	0	21	0.76
107483--107522	8	5.1	8	88	11	57	77	0	0	22	0.77
108025--108802	105	7.4	105	94	0	1295	23	17	25	33	1.96
120122--120161	16	2.4	16	87	4	53	70	0	5	25	1.08
120373--120416	18	2.3	20	84	11	65	59	4	18	18	1.55
120387--120428	19	2.3	19	83	4	50	52	2	19	26	1.58
120673--120730	30	2.0	29	86	3	80	72	0	6	20	1.07
121868--121900	11	2.8	12	90	9	59	75	0	0	24	0.80
130572--130792	41	5.4	41	85	2	300	19	19	23	37	1.94
130597--130812	20	10.6	20	78	3	180	17	20	23	38	1.93
130637--130770	21	6.5	21	79	3	164	20	18	26	33	1.96
130572--130731	62	2.6	61	91	1	248	21	18	23	36	1.95
130806--130875	22	3.3	22	72	11	83	18	18	24	38	1.93
130617--130815	103	1.9	103	90	1	319	18	20	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130723--130853	61	2.2	60	83	8	158	16	21	22	39	1.92
130784--130877	41	2.3	41	92	5	154	17	20	22	40	1.91
130959--131044	6	14.3	6	100	0	172	33	50	16	0	1.46
136960--137001	22	1.9	22	85	0	57	40	16	21	21	1.91
144838--144892	25	2.2	25	78	18	62	41	0	16	41	1.48
145249--145351	31	3.3	31	75	11	93	31	16	19	33	1.94
146295--146366	17	4.2	17	75	5	65	27	36	15	20	1.93

Tables:   1

The End!