Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003221.1 Hibiscus syriacus cultivar Beakdansim tig00006785_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103974

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4360--4569
65
3.3
62
80
12
201
30
24
19
26
1.98
4541--4589
19
2.6
19
81
9
57
24
24
22
28
1.99
9775--9812
15
2.5
15
86
0
58
26
13
10
50
1.73
16222--16272
22
2.3
22
75
0
57
25
17
27
29
1.98
18606--18657
24
2.0
24
82
10
59
34
5
19
40
1.75
21665--21715
17
3.1
17
74
2
50
31
1
1
64
1.15
20716--21898
591
2.0
593
95
0
2156
34
11
18
35
1.86
23245--23277
16
2.1
16
88
5
50
27
15
9
48
1.74
24401--24463
14
4.6
14
80
9
67
74
1
0
23
0.90
24740--24801
29
2.1
29
100
0
124
41
24
11
22
1.86
24962--25012
3
16.7
3
78
11
50
33
0
0
66
0.92
28679--28708
11
2.7
11
94
0
51
6
3
16
73
1.18
31751--31826
39
2.0
37
82
7
91
47
3
1
47
1.29
35065--35128
17
3.9
16
73
15
51
4
21
0
73
1.01
35072--35126
8
6.8
8
78
19
53
3
23
0
72
1.00
35063--35128
28
2.4
27
80
16
73
4
21
0
74
1.00
35448--35489
2
21.0
2
95
0
75
47
0
2
50
1.14
50222--50246
10
2.5
10
100
0
50
64
8
8
20
1.46
50294--50353
32
2.0
29
83
9
75
53
5
16
25
1.63
50309--50365
30
1.9
30
82
7
71
61
3
12
22
1.46
53760--53866
12
8.9
12
76
11
85
18
10
17
53
1.72
53769--53856
24
3.7
23
80
3
95
20
9
18
52
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53760--53868
48
2.3
48
91
3
175
19
10
17
53
1.72
58285--58342
21
2.8
22
77
17
61
72
6
0
20
1.07
60828--60882
23
2.4
23
84
3
67
25
25
27
21
2.00
60842--60924
21
3.8
22
84
7
91
21
24
25
28
1.99
67783--67847
23
3.0
22
80
6
69
73
6
3
16
1.16
69107--69163
3
19.0
3
100
0
114
66
0
0
33
0.92
69318--69369
15
3.2
16
78
13
52
44
0
0
55
0.99
69549--69591
6
7.2
6
82
17
54
32
2
0
65
1.06
69549--69591
13
3.6
12
81
18
54
32
2
0
65
1.06
69566--69594
13
2.2
13
100
0
58
31
0
0
68
0.89
72987--73017
3
10.3
3
100
0
62
67
0
0
32
0.91
73016--73046
3
10.3
3
100
0
62
32
0
0
67
0.91
77147--77177
2
15.5
2
100
0
62
51
0
0
48
1.00
81232--81265
12
2.8
12
100
0
68
23
17
35
23
1.95
81257--81331
20
3.7
20
96
1
132
32
20
28
20
1.97
81286--81324
12
3.6
12
74
25
50
35
17
25
20
1.95
81350--81457
8
15.0
8
68
21
53
26
16
30
25
1.97
81351--81450
21
4.8
21
78
10
98
27
17
30
26
1.97
81541--81598
30
1.9
30
96
0
107
46
18
3
31
1.66
83387--83415
14
2.0
15
93
6
51
6
37
0
55
1.27
84815--84909
20
4.7
20
90
2
104
30
17
29
22
1.97
84815--84909
41
2.3
40
87
1
127
30
17
29
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84928--85035
8
15.0
8
68
21
53
26
16
30
25
1.97
84929--85028
21
4.8
21
78
10
98
27
17
30
26
1.97
85119--85178
30
2.0
30
96
0
111
45
20
5
30
1.72
86966--86994
14
2.0
15
93
6
51
6
37
0
55
1.27
88409--88442
12
2.8
12
90
0
50
26
14
32
26
1.95
88422--88508
20
4.3
20
91
2
129
32
18
27
21
1.97
88422--88508
41
2.2
40
89
2
129
32
18
27
21
1.97
88463--88501
12
3.6
12
74
25
50
35
17
25
20
1.95
88527--88634
8
15.0
8
68
21
53
26
16
30
25
1.97
88528--88627
21
4.8
21
78
10
98
27
17
30
26
1.97
88718--88777
30
2.0
30
96
0
111
45
20
5
30
1.72
91998--92072
20
3.7
20
89
3
105
29
20
30
20
1.97
92150--92198
8
6.5
8
77
13
50
24
18
36
20
1.94
92092--92191
21
4.8
21
74
12
89
27
16
31
26
1.96
92282--92369
30
2.9
30
98
0
167
45
19
4
30
1.70
95944--96022
23
3.7
22
77
15
76
24
30
25
20
1.98
99879--99962
37
2.3
37
83
2
98
47
9
14
28
1.75
102309--102340
16
1.9
17
93
6
57
78
0
3
18
0.89
102523--102562
13
3.0
13
89
7
62
75
0
2
22
0.93
102523--102566
14
3.2
14
90
3
63
75
0
2
22
0.92
103820--103877
5
11.0
5
82
15
55
81
3
0
15
0.83

Tables:   1

The End!